Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNE45_RS01985 Genome accession   NZ_CP069061
Coordinates   369807..370235 (-) Length   142 a.a.
NCBI ID   WP_144472865.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364807..375235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS01955 (JNE45_01955) - 364967..365296 (+) 330 WP_048238266.1 YckD family protein -
  JNE45_RS01960 (JNE45_01960) - 365341..366105 (-) 765 WP_203129252.1 MBL fold metallo-hydrolase -
  JNE45_RS01965 (JNE45_01965) - 366222..366638 (+) 417 WP_203129950.1 Lrp/AsnC family transcriptional regulator -
  JNE45_RS01970 (JNE45_01970) - 366667..367473 (+) 807 WP_203129254.1 aminoglycoside N(3)-acetyltransferase -
  JNE45_RS01975 (JNE45_01975) - 367475..367861 (-) 387 WP_203129256.1 competence protein ComJ -
  JNE45_RS01980 (JNE45_01980) - 367982..369679 (-) 1698 WP_203129257.1 methyl-accepting chemotaxis protein -
  JNE45_RS01985 (JNE45_01985) nucA/comI 369807..370235 (-) 429 WP_144472865.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNE45_RS01990 (JNE45_01990) - 370603..372672 (+) 2070 WP_203129258.1 hydantoinase/oxoprolinase family protein -
  JNE45_RS01995 (JNE45_01995) - 372662..374650 (+) 1989 WP_203129259.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15856.81 Da        Isoelectric Point: 5.9135

>NTDB_id=532025 JNE45_RS01985 WP_144472865.1 369807..370235(-) (nucA/comI) [Bacillus safensis strain F6]
MKLLKIILLLLLIVIGVATGYIKLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDQS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVSPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=532025 JNE45_RS01985 WP_144472865.1 369807..370235(-) (nucA/comI) [Bacillus safensis strain F6]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTATTAATTGTCATTGGTGTAGCAACAGGCTATATCAAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCACTTTCCATCAGATCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGCACAATTGACCGTAAACATAGCGATGAGCAGAGAGATCAATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGTAAAGAAGGGGGCACAGGAGC
TTCTGTCAAATATGTAAGCCCTTCAGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAACTATCAGATGATCCTGATG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.698

74.648

0.535