Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JNE45_RS00255 Genome accession   NZ_CP069061
Coordinates   47371..47661 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42371..52661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS00215 (JNE45_00215) - 42404..42733 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  JNE45_RS00220 (JNE45_00220) - 42746..43186 (+) 441 WP_095407530.1 YaaR family protein -
  JNE45_RS00225 (JNE45_00225) holB 43198..44187 (+) 990 WP_203129109.1 DNA polymerase III subunit delta' -
  JNE45_RS00230 (JNE45_00230) - 44190..45017 (+) 828 WP_024425628.1 PSP1 domain-containing protein -
  JNE45_RS00235 (JNE45_00235) yabA 45032..45385 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  JNE45_RS00240 (JNE45_00240) - 45441..46184 (+) 744 WP_203129110.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JNE45_RS00245 (JNE45_00245) - 46171..46470 (+) 300 WP_041105706.1 GIY-YIG nuclease family protein -
  JNE45_RS00250 (JNE45_00250) rsmI 46445..47326 (+) 882 WP_144473104.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JNE45_RS00255 (JNE45_00255) abrB 47371..47661 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JNE45_RS00260 (JNE45_00260) metG 48182..50182 (+) 2001 WP_095407532.1 methionine--tRNA ligase -
  JNE45_RS00265 (JNE45_00265) - 50264..51031 (+) 768 WP_048239541.1 TatD family hydrolase -
  JNE45_RS00270 (JNE45_00270) - 51276..52478 (+) 1203 WP_203129111.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=532022 JNE45_RS00255 WP_087975202.1 47371..47661(-) (abrB) [Bacillus safensis strain F6]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=532022 JNE45_RS00255 WP_087975202.1 47371..47661(-) (abrB) [Bacillus safensis strain F6]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938