Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LAE73_RS05445 Genome accession   NZ_CP083379
Coordinates   1034352..1034900 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain C203115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1029352..1039900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE73_RS05415 (LAE73_05385) ctsT 1029395..1029700 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  LAE73_RS05420 (LAE73_05390) proC 1029697..1030434 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  LAE73_RS05425 (LAE73_05395) fliW 1030434..1030823 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  LAE73_RS05430 (LAE73_05400) - 1030987..1031634 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  LAE73_RS05435 (LAE73_05405) lon 1031650..1034025 (+) 2376 WP_223375609.1 endopeptidase La -
  LAE73_RS05440 (LAE73_05410) rpsR 1034081..1034341 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  LAE73_RS05445 (LAE73_05415) ssb 1034352..1034900 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  LAE73_RS05450 (LAE73_05420) rpsF 1034909..1035286 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  LAE73_RS05455 (LAE73_05425) - 1035565..1036836 (+) 1272 WP_002777080.1 MFS transporter -
  LAE73_RS05460 (LAE73_05430) - 1036836..1037837 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  LAE73_RS05465 (LAE73_05435) - 1037830..1038687 (-) 858 Protein_1076 VirK family antimicrobial peptide resistance protein -
  LAE73_RS05470 (LAE73_05440) rseP 1038684..1039787 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=532005 LAE73_RS05445 WP_002777084.1 1034352..1034900(-) (ssb) [Campylobacter coli strain C203115]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=532005 LAE73_RS05445 WP_002777084.1 1034352..1034900(-) (ssb) [Campylobacter coli strain C203115]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379