Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   LAE73_RS02425 Genome accession   NZ_CP083379
Coordinates   463874..464461 (+) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain C203115     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458874..469461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE73_RS02410 (LAE73_02385) ctsR 461581..461892 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  LAE73_RS02415 (LAE73_02390) ctsD 461870..463288 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LAE73_RS02420 (LAE73_02395) ctsP 463281..463877 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  LAE73_RS02425 (LAE73_02400) ctsX 463874..464461 (+) 588 WP_002810825.1 CDC27 family protein Machinery gene
  LAE73_RS02430 (LAE73_02405) ctsE 464454..466016 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  LAE73_RS02435 (LAE73_02410) ctsF 466003..467178 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  LAE73_RS02440 (LAE73_02415) - 467175..467939 (-) 765 WP_002784060.1 TSUP family transporter -
  LAE73_RS02445 (LAE73_02420) - 467942..468706 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=531987 LAE73_RS02425 WP_002810825.1 463874..464461(+) (ctsX) [Campylobacter coli strain C203115]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=531987 LAE73_RS02425 WP_002810825.1 463874..464461(+) (ctsX) [Campylobacter coli strain C203115]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436