Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   LAE75_RS05495 Genome accession   NZ_CP083378
Coordinates   1007982..1008287 (-) Length   101 a.a.
NCBI ID   WP_203545145.1    Uniprot ID   -
Organism   Campylobacter coli strain C203112     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1002982..1013287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS05460 (LAE75_05410) - 1003397..1004158 (+) 762 WP_025443303.1 ATP-binding protein -
  LAE75_RS05465 (LAE75_05415) - 1004155..1004838 (+) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  LAE75_RS05470 (LAE75_05420) thiD 1004838..1005650 (+) 813 WP_224027331.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LAE75_RS05475 (LAE75_05425) thiE 1005640..1006272 (+) 633 WP_224027332.1 thiamine phosphate synthase -
  LAE75_RS05480 (LAE75_05430) - 1006250..1006879 (+) 630 WP_025399044.1 uroporphyrinogen-III synthase -
  LAE75_RS05485 (LAE75_05435) - 1006872..1007324 (-) 453 WP_002777117.1 hypothetical protein -
  LAE75_RS05490 (LAE75_05440) - 1007321..1007989 (-) 669 WP_224027333.1 hypothetical protein -
  LAE75_RS05495 (LAE75_05445) ctsT 1007982..1008287 (-) 306 WP_203545145.1 hypothetical protein Machinery gene
  LAE75_RS05500 (LAE75_05450) proC 1008284..1009021 (-) 738 WP_042962350.1 pyrroline-5-carboxylate reductase Machinery gene
  LAE75_RS05505 (LAE75_05455) fliW 1009021..1009410 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  LAE75_RS05510 (LAE75_05460) - 1009574..1010221 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  LAE75_RS05515 (LAE75_05465) lon 1010237..1012612 (+) 2376 WP_002803792.1 endopeptidase La -
  LAE75_RS05520 (LAE75_05470) rpsR 1012669..1012929 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12250.06 Da        Isoelectric Point: 6.4746

>NTDB_id=531962 LAE75_RS05495 WP_203545145.1 1007982..1008287(-) (ctsT) [Campylobacter coli strain C203112]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNGNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=531962 LAE75_RS05495 WP_203545145.1 1007982..1008287(-) (ctsT) [Campylobacter coli strain C203112]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGGCAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

47.959

97.03

0.465