Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LAE75_RS04870 Genome accession   NZ_CP083378
Coordinates   883777..884643 (+) Length   288 a.a.
NCBI ID   WP_002777377.1    Uniprot ID   A0ABP2NR16
Organism   Campylobacter coli strain C203112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 878777..889643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS04845 (LAE75_04790) - 879212..880471 (-) 1260 WP_057040111.1 ComEC/Rec2 family competence protein -
  LAE75_RS04850 (LAE75_04795) - 880471..881028 (-) 558 WP_002788123.1 DedA family protein -
  LAE75_RS04855 (LAE75_04800) rny 881039..882592 (-) 1554 WP_002788126.1 ribonuclease Y -
  LAE75_RS04860 (LAE75_04805) - 882513..883139 (-) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  LAE75_RS04865 (LAE75_04810) - 883220..883777 (+) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  LAE75_RS04870 (LAE75_04815) pilA 883777..884643 (+) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  LAE75_RS04875 (LAE75_04820) - 884640..885584 (-) 945 WP_002777375.1 GTP-binding protein -
  LAE75_RS04880 (LAE75_04825) - 885577..885912 (-) 336 WP_002777373.1 hypothetical protein -
  LAE75_RS04885 (LAE75_04830) - 885954..886835 (-) 882 WP_002781290.1 polysaccharide deacetylase -
  LAE75_RS04890 (LAE75_04835) - 886838..887689 (-) 852 WP_002784379.1 carbon-nitrogen hydrolase family protein -
  LAE75_RS04895 (LAE75_04840) radA/sms 887825..889165 (+) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31816.85 Da        Isoelectric Point: 5.1228

>NTDB_id=531955 LAE75_RS04870 WP_002777377.1 883777..884643(+) (pilA) [Campylobacter coli strain C203112]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=531955 LAE75_RS04870 WP_002777377.1 883777..884643(+) (pilA) [Campylobacter coli strain C203112]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGCACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444