Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   LAE75_RS04475 Genome accession   NZ_CP083378
Coordinates   813879..814475 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain C203112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808879..819475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS04460 (LAE75_04415) ctsR 811586..811897 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  LAE75_RS04465 (LAE75_04420) ctsD 811875..813293 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LAE75_RS04470 (LAE75_04425) ctsP 813286..813882 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  LAE75_RS04475 (LAE75_04430) ctsX 813879..814475 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  LAE75_RS04480 (LAE75_04435) ctsE 814468..816030 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  LAE75_RS04485 (LAE75_04440) ctsF 816017..817192 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  LAE75_RS04490 (LAE75_04445) - 817189..817953 (-) 765 WP_002781157.1 TSUP family transporter -
  LAE75_RS04495 (LAE75_04450) - 817956..818720 (-) 765 WP_060808172.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=531949 LAE75_RS04475 WP_002779313.1 813879..814475(+) (ctsX) [Campylobacter coli strain C203112]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=531949 LAE75_RS04475 WP_002779313.1 813879..814475(+) (ctsX) [Campylobacter coli strain C203112]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434