Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IPZ53_RS11565 Genome accession   NZ_CP068989
Coordinates   2435709..2436044 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain WSM-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430709..2441044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ53_RS11545 (IPZ53_11545) gcvT 2431316..2432416 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  IPZ53_RS11550 (IPZ53_11550) - 2432839..2434509 (+) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  IPZ53_RS11555 (IPZ53_11555) - 2434531..2435325 (+) 795 WP_007612541.1 YqhG family protein -
  IPZ53_RS11560 (IPZ53_11560) sinI 2435502..2435675 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  IPZ53_RS11565 (IPZ53_11565) sinR 2435709..2436044 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  IPZ53_RS11570 (IPZ53_11570) tasA 2436092..2436877 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  IPZ53_RS11575 (IPZ53_11575) sipW 2436942..2437526 (-) 585 WP_032874025.1 signal peptidase I SipW -
  IPZ53_RS11580 (IPZ53_11580) tapA 2437498..2438169 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  IPZ53_RS11585 (IPZ53_11585) - 2438428..2438757 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  IPZ53_RS11590 (IPZ53_11590) - 2438798..2438977 (-) 180 WP_022552966.1 YqzE family protein -
  IPZ53_RS11595 (IPZ53_11595) comGG 2439034..2439411 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  IPZ53_RS11600 (IPZ53_11600) comGF 2439412..2439912 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  IPZ53_RS11605 (IPZ53_11605) comGE 2439821..2440135 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  IPZ53_RS11610 (IPZ53_11610) comGD 2440119..2440556 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  IPZ53_RS11615 (IPZ53_11615) comGC 2440546..2440854 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=531920 IPZ53_RS11565 WP_003153104.1 2435709..2436044(+) (sinR) [Bacillus velezensis strain WSM-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=531920 IPZ53_RS11565 WP_003153104.1 2435709..2436044(+) (sinR) [Bacillus velezensis strain WSM-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991