Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   LAE76_RS06280 Genome accession   NZ_CP083377
Coordinates   1189241..1189546 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain C203110     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1184241..1194546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE76_RS06245 (LAE76_06215) - 1184656..1185417 (+) 762 WP_025431509.1 ATP-binding protein -
  LAE76_RS06250 (LAE76_06220) - 1185414..1186097 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  LAE76_RS06255 (LAE76_06225) thiD 1186097..1186909 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LAE76_RS06260 (LAE76_06230) thiE 1186899..1187531 (+) 633 WP_223375610.1 thiamine phosphate synthase -
  LAE76_RS06265 (LAE76_06235) - 1187509..1188138 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  LAE76_RS06270 (LAE76_06240) - 1188131..1188583 (-) 453 WP_002777117.1 hypothetical protein -
  LAE76_RS06275 (LAE76_06245) - 1188580..1189248 (-) 669 WP_002790524.1 hypothetical protein -
  LAE76_RS06280 (LAE76_06250) ctsT 1189241..1189546 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  LAE76_RS06285 (LAE76_06255) proC 1189543..1190280 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  LAE76_RS06290 (LAE76_06260) fliW 1190280..1190669 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  LAE76_RS06295 (LAE76_06265) - 1190833..1191480 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  LAE76_RS06300 (LAE76_06270) lon 1191496..1193871 (+) 2376 WP_223375609.1 endopeptidase La -
  LAE76_RS06305 (LAE76_06275) rpsR 1193927..1194187 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=531913 LAE76_RS06280 WP_002790525.1 1189241..1189546(-) (ctsT) [Campylobacter coli strain C203110]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=531913 LAE76_RS06280 WP_002790525.1 1189241..1189546(-) (ctsT) [Campylobacter coli strain C203110]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475