Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IPZ53_RS06995 Genome accession   NZ_CP068989
Coordinates   1357010..1357474 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain WSM-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352010..1362474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPZ53_RS06975 (IPZ53_06975) - 1352491..1354311 (+) 1821 WP_032874722.1 PAS domain-containing protein -
  IPZ53_RS06980 (IPZ53_06980) - 1354292..1355505 (-) 1214 Protein_1327 aminotransferase A -
  IPZ53_RS06985 (IPZ53_06985) - 1355706..1355867 (-) 162 WP_007409608.1 hypothetical protein -
  IPZ53_RS06990 (IPZ53_06990) cheV 1356056..1356967 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  IPZ53_RS06995 (IPZ53_06995) kre 1357010..1357474 (-) 465 WP_003154622.1 YkyB family protein Regulator
  IPZ53_RS07000 (IPZ53_07000) - 1357597..1358889 (-) 1293 WP_007611093.1 MFS transporter -
  IPZ53_RS07005 (IPZ53_07005) - 1358965..1359459 (-) 495 WP_087920795.1 L,D-transpeptidase family protein -
  IPZ53_RS07010 (IPZ53_07010) - 1359534..1360397 (-) 864 WP_032874726.1 metallophosphoesterase -
  IPZ53_RS07015 (IPZ53_07015) fadH 1360541..1361305 (+) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  IPZ53_RS07020 (IPZ53_07020) - 1361419..1361967 (+) 549 WP_032874729.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=531908 IPZ53_RS06995 WP_003154622.1 1357010..1357474(-) (kre) [Bacillus velezensis strain WSM-1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=531908 IPZ53_RS06995 WP_003154622.1 1357010..1357474(-) (kre) [Bacillus velezensis strain WSM-1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929