Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DI291_RS13705 Genome accession   NZ_CP068988
Coordinates   2735042..2735812 (-) Length   256 a.a.
NCBI ID   WP_128822571.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2730042..2740812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS13685 (DI291_14095) - 2730117..2730929 (-) 813 WP_023855239.1 pyruvate, water dikinase regulatory protein -
  DI291_RS13690 (DI291_14100) - 2730955..2731593 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  DI291_RS13695 (DI291_14105) glyS 2731791..2733830 (-) 2040 WP_095291034.1 glycine--tRNA ligase subunit beta -
  DI291_RS13700 (DI291_14110) glyQ 2733823..2734710 (-) 888 WP_020452239.1 glycine--tRNA ligase subunit alpha -
  DI291_RS13705 (DI291_14115) recO 2735042..2735812 (-) 771 WP_128822571.1 DNA repair protein RecO Machinery gene
  DI291_RS13710 (DI291_14120) - 2735850..2735993 (-) 144 WP_003183626.1 YqzL family protein -
  DI291_RS13715 (DI291_14125) era 2736155..2737060 (-) 906 WP_023855242.1 GTPase Era -
  DI291_RS13720 (DI291_14130) - 2737041..2737451 (-) 411 WP_020452242.1 cytidine deaminase -
  DI291_RS13725 (DI291_14135) - 2737584..2737964 (-) 381 WP_020452243.1 diacylglycerol kinase family protein -
  DI291_RS13730 (DI291_14140) ybeY 2737942..2738418 (-) 477 WP_020452244.1 rRNA maturation RNase YbeY -
  DI291_RS13735 (DI291_14145) - 2738415..2740469 (-) 2055 WP_243456963.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29513.10 Da        Isoelectric Point: 8.0248

>NTDB_id=531853 DI291_RS13705 WP_128822571.1 2735042..2735812(-) (recO) [Bacillus paralicheniformis strain SUBG0010]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYITELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFANDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=531853 DI291_RS13705 WP_128822571.1 2735042..2735812(-) (recO) [Bacillus paralicheniformis strain SUBG0010]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCACTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGTGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTACATTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAACGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGACCTGTCAAGGCTCGGCAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATACAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77