Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   DI291_RS13340 Genome accession   NZ_CP068988
Coordinates   2671792..2672826 (-) Length   344 a.a.
NCBI ID   WP_035338372.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2666792..2677826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS13290 (DI291_13685) - 2666863..2667657 (-) 795 WP_020452167.1 TasA family protein -
  DI291_RS13295 (DI291_13690) - 2667730..2668314 (-) 585 WP_023855186.1 signal peptidase I -
  DI291_RS13300 (DI291_13695) tapA 2668311..2669039 (-) 729 WP_205802129.1 amyloid fiber anchoring/assembly protein TapA -
  DI291_RS13305 (DI291_13700) - 2669316..2669636 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  DI291_RS13310 (DI291_13705) - 2669666..2669848 (-) 183 WP_020452171.1 YqzE family protein -
  DI291_RS13315 (DI291_13710) comGG 2669937..2670302 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  DI291_RS13320 (DI291_13715) comGF 2670314..2670802 (-) 489 WP_229128989.1 competence type IV pilus minor pilin ComGF -
  DI291_RS13325 (DI291_13720) comGE 2670711..2671058 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -
  DI291_RS13330 (DI291_13725) comGD 2671042..2671479 (-) 438 WP_095291094.1 competence type IV pilus minor pilin ComGD -
  DI291_RS13335 (DI291_13730) comGC 2671485..2671778 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  DI291_RS13340 (DI291_13735) comGB 2671792..2672826 (-) 1035 WP_035338372.1 competence type IV pilus assembly protein ComGB Machinery gene
  DI291_RS13345 (DI291_13740) comGA 2672816..2673880 (-) 1065 WP_095291091.1 competence type IV pilus ATPase ComGA Machinery gene
  DI291_RS13350 (DI291_13745) - 2674038..2674877 (-) 840 WP_020452179.1 STAS domain-containing protein -
  DI291_RS13360 (DI291_13755) - 2675119..2675496 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  DI291_RS13365 (DI291_13760) - 2675707..2675952 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  DI291_RS13370 (DI291_13765) - 2675988..2676626 (-) 639 WP_095291088.1 MBL fold metallo-hydrolase -
  DI291_RS13375 (DI291_13770) - 2676782..2676955 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  DI291_RS13380 (DI291_13775) - 2677016..2677330 (-) 315 WP_095291085.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39807.12 Da        Isoelectric Point: 9.6575

>NTDB_id=531851 DI291_RS13340 WP_035338372.1 2671792..2672826(-) (comGB) [Bacillus paralicheniformis strain SUBG0010]
MKIKMKWPVREQADILKKLGDMMKSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGRPVFQVLEMISFHKDAVTIVYF
AEQHGNLPYAFRQSGELLHRKIAQTEKLKKAARYPLFLVLTVCVIISIMKSAIIPQFSAIYESMNVETSFATTLIFSVFD
HFYLFIAGMMLIAAALSLYYLCSFRHKPPEDKMTFLIRIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LSFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=531851 DI291_RS13340 WP_035338372.1 2671792..2672826(-) (comGB) [Bacillus paralicheniformis strain SUBG0010]
ATGAAGATTAAAATGAAGTGGCCCGTCCGGGAACAGGCGGACATTCTGAAAAAACTCGGAGACATGATGAAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAACTGCAATTGAATGAAAGGCGAAGAGCAGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGCGACCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTTACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATATGCCTTTCGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ACTAAAGAAAGCCGCCAGATATCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATTATCTCTATTATGAAATCGGCAATCA
TCCCGCAATTTTCCGCGATCTATGAATCAATGAACGTTGAAACGTCTTTTGCAACGACCCTCATCTTTTCGGTTTTTGAT
CATTTTTATCTTTTTATCGCAGGAATGATGTTGATTGCCGCCGCTTTATCCCTCTATTATCTGTGTTCATTTCGCCATAA
ACCTCCAGAAGACAAAATGACCTTTCTCATTAGAATCCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGTTATTTTT
TATCGCTCCAATTGAGCAATCTTTTGCAAGCTGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTATCATTTCATAAAAATGAAGCGAAGCGCCTGATCGAGCGGCTGAAACAAGGGGAGAGTCTGGAGCAGATGCTGGCCGG
GCATCCGTTTTATGAAAATGATCTGGCGAAGGCTGTTGCTCACGGCCAATTAAACGGACACTTATACAGAGAGCTGTATT
CATACAGTCAATTTTTGATTGAACGGCTTGAACGGAAAGCAGAAAAATGGACAGGTTTGATCCAGCCATTGATTTACGGG
CTAACAGCGGCGATGATATTAATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

57.276

93.895

0.538