Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DI291_RS13285 Genome accession   NZ_CP068988
Coordinates   2666423..2666758 (+) Length   111 a.a.
NCBI ID   WP_023855185.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2661423..2671758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS13265 (DI291_13655) gcvT 2661853..2662947 (-) 1095 WP_205802128.1 glycine cleavage system aminomethyltransferase GcvT -
  DI291_RS13270 (DI291_13665) - 2663542..2665221 (+) 1680 WP_020452163.1 SNF2-related protein -
  DI291_RS13275 (DI291_13670) - 2665228..2666022 (+) 795 WP_020452164.1 YqhG family protein -
  DI291_RS13280 (DI291_13675) sinI 2666213..2666389 (+) 177 WP_020452165.1 anti-repressor SinI family protein Regulator
  DI291_RS13285 (DI291_13680) sinR 2666423..2666758 (+) 336 WP_023855185.1 helix-turn-helix domain-containing protein Regulator
  DI291_RS13290 (DI291_13685) - 2666863..2667657 (-) 795 WP_020452167.1 TasA family protein -
  DI291_RS13295 (DI291_13690) - 2667730..2668314 (-) 585 WP_023855186.1 signal peptidase I -
  DI291_RS13300 (DI291_13695) tapA 2668311..2669039 (-) 729 WP_205802129.1 amyloid fiber anchoring/assembly protein TapA -
  DI291_RS13305 (DI291_13700) - 2669316..2669636 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  DI291_RS13310 (DI291_13705) - 2669666..2669848 (-) 183 WP_020452171.1 YqzE family protein -
  DI291_RS13315 (DI291_13710) comGG 2669937..2670302 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  DI291_RS13320 (DI291_13715) comGF 2670314..2670802 (-) 489 WP_229128989.1 competence type IV pilus minor pilin ComGF -
  DI291_RS13325 (DI291_13720) comGE 2670711..2671058 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -
  DI291_RS13330 (DI291_13725) comGD 2671042..2671479 (-) 438 WP_095291094.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12962.60 Da        Isoelectric Point: 7.0171

>NTDB_id=531849 DI291_RS13285 WP_023855185.1 2666423..2666758(+) (sinR) [Bacillus paralicheniformis strain SUBG0010]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=531849 DI291_RS13285 WP_023855185.1 2666423..2666758(+) (sinR) [Bacillus paralicheniformis strain SUBG0010]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928