Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DI291_RS11935 Genome accession   NZ_CP068988
Coordinates   2378664..2379260 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373664..2384260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS11895 (DI291_12255) - 2374694..2375200 (-) 507 WP_020451914.1 PTS glucose transporter subunit IIA -
  DI291_RS11900 (DI291_12260) - 2375373..2375792 (+) 420 WP_023857414.1 Hsp20 family protein -
  DI291_RS11905 (DI291_12265) - 2375811..2376257 (-) 447 WP_020451916.1 YppG family protein -
  DI291_RS11910 (DI291_12270) - 2376436..2376636 (+) 201 WP_011198064.1 YppF family protein -
  DI291_RS11915 (DI291_12275) - 2376660..2377031 (-) 372 WP_026579400.1 YppE family protein -
  DI291_RS11920 (DI291_12280) - 2377089..2377316 (-) 228 WP_128823143.1 YppD family protein -
  DI291_RS11925 (DI291_12285) sspM 2377516..2377620 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  DI291_RS11930 (DI291_12290) - 2377652..2378584 (-) 933 WP_223254879.1 DUF2515 domain-containing protein -
  DI291_RS11935 (DI291_12295) recU 2378664..2379260 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  DI291_RS11940 (DI291_12300) - 2379318..2381987 (+) 2670 WP_145625191.1 PBP1A family penicillin-binding protein -
  DI291_RS11945 (DI291_12305) - 2382008..2382472 (-) 465 WP_229078800.1 YpoC family protein -
  DI291_RS11950 (DI291_12310) nth 2382508..2383170 (-) 663 WP_128823145.1 endonuclease III -
  DI291_RS11955 (DI291_12315) - 2383187..2383885 (-) 699 WP_128823148.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=531845 DI291_RS11935 WP_003182896.1 2378664..2379260(+) (recU) [Bacillus paralicheniformis strain SUBG0010]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=531845 DI291_RS11935 WP_003182896.1 2378664..2379260(+) (recU) [Bacillus paralicheniformis strain SUBG0010]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAAAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833