Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DI291_RS10160 Genome accession   NZ_CP068988
Coordinates   1997443..1997871 (+) Length   142 a.a.
NCBI ID   WP_079289396.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1992443..2002871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS10130 (DI291_10435) - 1992699..1993307 (+) 609 WP_106070748.1 flavin reductase family protein -
  DI291_RS10135 (DI291_10440) wrbA 1993509..1994123 (+) 615 WP_020451586.1 NAD(P)H:quinone oxidoreductase -
  DI291_RS10140 - 1994434..1994574 (+) 141 WP_023857597.1 hypothetical protein -
  DI291_RS10145 (DI291_10445) - 1994567..1995400 (+) 834 WP_020451587.1 prohibitin family protein -
  DI291_RS10150 (DI291_10450) - 1995489..1996250 (+) 762 WP_103750446.1 hypothetical protein -
  DI291_RS10155 (DI291_10455) - 1996310..1997149 (+) 840 WP_075213301.1 thymidylate synthase -
  DI291_RS10160 (DI291_10460) nucA/comI 1997443..1997871 (+) 429 WP_079289396.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DI291_RS10165 (DI291_10470) lexA 1998071..1998694 (-) 624 WP_020451591.1 transcriptional repressor LexA -
  DI291_RS10170 (DI291_10475) yneA 1998846..1999157 (+) 312 WP_020451592.1 cell division suppressor protein YneA -
  DI291_RS10175 (DI291_10480) - 1999176..1999823 (+) 648 WP_020451593.1 recombinase family protein -
  DI291_RS10180 (DI291_10485) - 1999889..2000122 (+) 234 WP_020451594.1 DUF896 domain-containing protein -
  DI291_RS10185 (DI291_10490) tkt 2000286..2002289 (+) 2004 WP_023857593.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15462.44 Da        Isoelectric Point: 7.8950

>NTDB_id=531844 DI291_RS10160 WP_079289396.1 1997443..1997871(+) (nucA/comI) [Bacillus paralicheniformis strain SUBG0010]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGVARYDEVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=531844 DI291_RS10160 WP_079289396.1 1997443..1997871(+) (nucA/comI) [Bacillus paralicheniformis strain SUBG0010]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTCC
TCAGCATGCCGAAGGCGTTGCAAGGTATGATGAAGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACCGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

88.732

0.535