Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DI291_RS06680 Genome accession   NZ_CP068988
Coordinates   1341010..1342839 (+) Length   609 a.a.
NCBI ID   WP_326455402.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336010..1347839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS06665 (DI291_06855) - 1337193..1337912 (-) 720 WP_020450941.1 response regulator -
  DI291_RS06670 (DI291_06860) - 1337916..1339478 (-) 1563 WP_205802218.1 sensor histidine kinase -
  DI291_RS06675 (DI291_06865) - 1339649..1340797 (+) 1149 WP_128822774.1 competence protein CoiA family protein -
  DI291_RS06680 (DI291_06870) pepF 1341010..1342839 (+) 1830 WP_326455402.1 oligoendopeptidase F Regulator
  DI291_RS21725 - 1342897..1343064 (-) 168 WP_023856663.1 hypothetical protein -
  DI291_RS06685 (DI291_06880) spxH 1343475..1344377 (-) 903 WP_003180650.1 protease adaptor protein SpxH -
  DI291_RS06690 (DI291_06885) - 1344374..1344772 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  DI291_RS06695 (DI291_06890) - 1345056..1345709 (-) 654 WP_025811634.1 lytic transglycosylase domain-containing protein -
  DI291_RS06700 (DI291_06895) - 1345722..1346294 (-) 573 WP_123032289.1 CYTH domain-containing protein -
  DI291_RS06705 (DI291_06900) - 1346425..1346790 (+) 366 WP_003180659.1 hypothetical protein -
  DI291_RS06710 (DI291_06905) - 1346822..1347457 (+) 636 WP_003180661.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70446.00 Da        Isoelectric Point: 4.8226

>NTDB_id=531833 DI291_RS06680 WP_326455402.1 1341010..1342839(+) (pepF) [Bacillus paralicheniformis strain SUBG0010]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWSEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFGMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYDRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHIKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=531833 DI291_RS06680 WP_326455402.1 1341010..1342839(+) (pepF) [Bacillus paralicheniformis strain SUBG0010]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAGCGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATCTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTACCAAGGTCTAAATGATAAAGCGGCCAACCTCTA
TACCCAGGCAGCGAGCGCAACGGCCTACATGGTGCCGGAAATACTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGC
TGGAAAAAGAGGAGTTAAAGCTTTACTCGCATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCACGTACTGAGCGAGGAG
GAGGAAGGAATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAACACGTTCGGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGAGAAAAGGTACAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGACCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
AAACAGCATTCCTGAAGAAGTCTATGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AACTTAGAAAAAAAGTGCTTGAGCTTGATGAAGTACACATGTATGACCTGTATACTCCGCTGGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCCAAGGACTATATGCTAAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATCCTGAA
AGAAGGCTTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGCAGCGGCGCTTATTCTTCAGGAACTTACG
GAACAAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTAGCTTCTAC
GACGAATGAAGCACTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTACATTTTGAATCATA
TGCTTGAAGGCTTCAAAGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATATCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTATTACAATTATTATGTGTATCAGTATGCGACAG
GCTTCAGTGCAGCTCAGGCACTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGTAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTTGATATGACCTCTTCGGAGCCAATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.419

98.03

0.494