Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DI291_RS05980 Genome accession   NZ_CP068988
Coordinates   1190770..1191348 (+) Length   192 a.a.
NCBI ID   WP_128822841.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185770..1196348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS05960 (DI291_06165) - 1186268..1187560 (-) 1293 WP_128822843.1 globin-coupled sensor protein -
  DI291_RS05965 (DI291_06170) - 1187667..1189175 (-) 1509 WP_229029948.1 FAD-dependent oxidoreductase -
  DI291_RS05970 (DI291_06175) - 1189338..1190195 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  DI291_RS05975 (DI291_06180) - 1190264..1190497 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  DI291_RS05980 (DI291_06185) comK 1190770..1191348 (+) 579 WP_128822841.1 competence protein ComK Regulator
  DI291_RS05985 (DI291_06190) - 1191342..1191707 (-) 366 WP_020450830.1 hypothetical protein -
  DI291_RS05990 (DI291_06195) - 1191915..1192526 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  DI291_RS05995 (DI291_06200) lepB 1192539..1193057 (+) 519 WP_128822839.1 signal peptidase I -
  DI291_RS06000 (DI291_06210) - 1193186..1194925 (-) 1740 WP_128822836.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22436.64 Da        Isoelectric Point: 8.6274

>NTDB_id=531824 DI291_RS05980 WP_128822841.1 1190770..1191348(+) (comK) [Bacillus paralicheniformis strain SUBG0010]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHSHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=531824 DI291_RS05980 WP_128822841.1 1190770..1191348(+) (comK) [Bacillus paralicheniformis strain SUBG0010]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATTC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672