Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DI291_RS00170 Genome accession   NZ_CP068988
Coordinates   30184..31296 (+) Length   370 a.a.
NCBI ID   WP_025810489.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SUBG0010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25184..36296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI291_RS00145 (DI291_00145) rnpA 25911..26270 (-) 360 WP_020453656.1 ribonuclease P protein component -
  DI291_RS00150 (DI291_00150) rpmH 26355..26489 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  DI291_RS00155 (DI291_00155) dnaA 27131..28471 (+) 1341 WP_023856797.1 chromosomal replication initiator protein DnaA -
  DI291_RS00160 (DI291_00160) dnaN 28649..29785 (+) 1137 WP_065643453.1 DNA polymerase III subunit beta -
  DI291_RS00165 (DI291_00165) yaaA 29952..30167 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  DI291_RS00170 (DI291_00170) recF 30184..31296 (+) 1113 WP_025810489.1 DNA replication/repair protein RecF Machinery gene
  DI291_RS00175 (DI291_00175) - 31314..31556 (+) 243 WP_023856795.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  DI291_RS00180 (DI291_00180) gyrB 31617..33530 (+) 1914 WP_031305110.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DI291_RS00185 (DI291_00185) gyrA 33722..36196 (+) 2475 WP_039073092.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42542.43 Da        Isoelectric Point: 6.7331

>NTDB_id=531809 DI291_RS00170 WP_025810489.1 30184..31296(+) (recF) [Bacillus paralicheniformis strain SUBG0010]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGF
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=531809 DI291_RS00170 WP_025810489.1 30184..31296(+) (recF) [Bacillus paralicheniformis strain SUBG0010]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAAAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTTT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886