Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JN403_RS12365 Genome accession   NZ_CP068986
Coordinates   2742806..2743480 (+) Length   224 a.a.
NCBI ID   WP_172609193.1    Uniprot ID   -
Organism   Pseudomonas sp. 15A4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2737806..2748480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN403_RS12345 (JN403_12345) - 2737933..2738865 (+) 933 WP_122535564.1 ABC transporter ATP-binding protein -
  JN403_RS12350 (JN403_12350) - 2738862..2739641 (+) 780 WP_065993104.1 ABC transporter permease -
  JN403_RS12355 (JN403_12355) - 2739838..2740353 (-) 516 WP_122535563.1 DUF2062 domain-containing protein -
  JN403_RS12360 (JN403_12360) - 2740507..2742722 (+) 2216 Protein_2436 DNA internalization-related competence protein ComEC/Rec2 -
  JN403_RS12365 (JN403_12365) exbB 2742806..2743480 (+) 675 WP_172609193.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JN403_RS12370 (JN403_12370) - 2743477..2743907 (+) 431 Protein_2438 biopolymer transporter ExbD -
  JN403_RS12375 (JN403_12375) lpxK 2743907..2744900 (+) 994 Protein_2439 tetraacyldisaccharide 4'-kinase -
  JN403_RS12380 (JN403_12380) - 2744918..2745103 (+) 186 WP_003174668.1 Trm112 family protein -
  JN403_RS12385 (JN403_12385) kdsB 2745100..2745864 (+) 765 WP_205487137.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JN403_RS12390 (JN403_12390) murB 2745911..2746930 (+) 1020 WP_205487138.1 UDP-N-acetylmuramate dehydrogenase -
  JN403_RS12395 (JN403_12395) - 2746990..2747585 (+) 596 Protein_2443 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24240.52 Da        Isoelectric Point: 7.3251

>NTDB_id=531801 JN403_RS12365 WP_172609193.1 2742806..2743480(+) (exbB) [Pseudomonas sp. 15A4]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSAEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSSGMTGNAGMLAGGIGKALICTA
SGLTVAIPAIFFHRYLQTRVDELVVGMEQEAIKLVEVVQGDRDVDLTDAKPDIKAAARGEGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=531801 JN403_RS12365 WP_172609193.1 2742806..2743480(+) (exbB) [Pseudomonas sp. 15A4]
GTGTGGGAGCTGGTCAAATCAGGTGGCTGGATGATGCTACCGATCATTTTGAGTTCCATCGCCGCCGTCGGAATCATCAT
TGAACGCCTCTGGACCCTGCGCGCCAGTCGCATCACGCCGCCGCATTTGCTCGGCCAGGTGTGGCGCTGGATTCAGGACA
AGCAACTGAGCGCCGAAAAGCTCAAAGAGCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCCGGTCTGGCCAAT
TCCCGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCAGCCCGGGTCATTCACGAGCTCGAACGCTATCT
GGCGACACTCGGGACCATCGCTGCCATGGCCCCGCTGCTGGGTCTGCTCGGCACCGTGCTCGGCATGATCGACATCTTCA
GCTCGTTCACCAGCAGTGGCATGACGGGCAACGCCGGCATGCTTGCCGGCGGTATTGGCAAGGCACTGATCTGCACCGCG
TCCGGCCTGACCGTTGCGATTCCCGCGATCTTCTTCCATCGCTACCTGCAAACGCGCGTCGATGAGCTAGTGGTCGGCAT
GGAACAGGAAGCCATCAAACTGGTGGAAGTCGTGCAGGGCGACCGTGACGTCGACCTCACCGACGCCAAGCCGGACATCA
AGGCTGCCGCACGTGGCGAGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.429

93.75

0.763