Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K9N54_RS16975 Genome accession   NZ_CP083361
Coordinates   3535535..3535747 (-) Length   70 a.a.
NCBI ID   WP_033929743.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3530535..3540747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS16960 (K9N54_16840) - 3533013..3533762 (+) 750 WP_156216627.1 M48 family metallopeptidase -
  K9N54_RS16965 (K9N54_16845) - 3533788..3534384 (+) 597 WP_107111805.1 pancortin-3 -
  K9N54_RS16970 (K9N54_16850) - 3534384..3535496 (+) 1113 WP_156216625.1 hypothetical protein -
  K9N54_RS16975 (K9N54_16855) sinR 3535535..3535747 (-) 213 WP_033929743.1 helix-turn-helix domain-containing protein Regulator
  K9N54_RS16980 (K9N54_16860) - 3536051..3536326 (+) 276 WP_156216623.1 hypothetical protein -
  K9N54_RS16985 (K9N54_16865) - 3536398..3536964 (-) 567 Protein_3157 type I restriction-modification system subunit M N-terminal domain-containing protein -
  K9N54_RS16990 (K9N54_16870) - 3536973..3537914 (-) 942 WP_156216669.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  K9N54_RS16995 (K9N54_16875) - 3537917..3538321 (-) 405 WP_000127617.1 DUF6088 family protein -
  K9N54_RS17000 (K9N54_16880) - 3538583..3538771 (-) 189 WP_000342585.1 hypothetical protein -
  K9N54_RS17005 (K9N54_16885) - 3538781..3539164 (-) 384 WP_156216668.1 hypothetical protein -
  K9N54_RS17010 (K9N54_16890) - 3539157..3540500 (-) 1344 WP_156216666.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7903.03 Da        Isoelectric Point: 7.0105

>NTDB_id=531777 K9N54_RS16975 WP_033929743.1 3535535..3535747(-) (sinR) [Vibrio parahaemolyticus strain 20-082E4]
MKDPRLVAFGERVRQIRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLISD

Nucleotide


Download         Length: 213 bp        

>NTDB_id=531777 K9N54_RS16975 WP_033929743.1 3535535..3535747(-) (sinR) [Vibrio parahaemolyticus strain 20-082E4]
ATGAAAGATCCACGTTTAGTCGCATTTGGGGAAAGAGTGCGTCAGATAAGAAAAGAAAAAGGGCTGTCGCAGGAAGCCTT
GGCCGATCTAGCAGGGATCGACCGGAGTTATATGGGGCATATTGAACGCGGTGATCAGAACATTACACTCACTAAAATCT
ATCAGATATCTGAAGCTTTAAGGGTGTCAGTTTCAGATTTGATTTCTGACTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

41.935

88.571

0.371