Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K9N54_RS13320 Genome accession   NZ_CP083361
Coordinates   2756697..2758076 (-) Length   459 a.a.
NCBI ID   WP_005456064.1    Uniprot ID   Q87M29
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2751697..2763076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS13305 (K9N54_13190) - 2752955..2753164 (-) 210 WP_005494095.1 DUF1127 domain-containing protein -
  K9N54_RS13310 (K9N54_13195) - 2753263..2754189 (+) 927 WP_023584078.1 LysR substrate-binding domain-containing protein -
  K9N54_RS13315 (K9N54_13200) fusA 2754390..2756480 (-) 2091 WP_005456593.1 elongation factor G -
  K9N54_RS13320 (K9N54_13205) radA/sms 2756697..2758076 (-) 1380 WP_005456064.1 DNA repair protein RadA Machinery gene
  K9N54_RS13325 (K9N54_13210) - 2758213..2760561 (+) 2349 WP_025792905.1 PilZ domain-containing protein -
  K9N54_RS13330 (K9N54_13215) serB 2760604..2761584 (-) 981 WP_020841223.1 phosphoserine phosphatase -
  K9N54_RS13335 (K9N54_13220) - 2761676..2762281 (+) 606 WP_005481596.1 YtjB family periplasmic protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49221.64 Da        Isoelectric Point: 7.4131

>NTDB_id=531745 K9N54_RS13320 WP_005456064.1 2756697..2758076(-) (radA/sms) [Vibrio parahaemolyticus strain 20-082E4]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=531745 K9N54_RS13320 WP_005456064.1 2756697..2758076(-) (radA/sms) [Vibrio parahaemolyticus strain 20-082E4]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGTTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGCGCGGCGATTCTGATAGGTGGTAACCCTGGAGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCGGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCATGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
TGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
CGGTGGTCTGCAAATGGCCGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTAGCTGGCGAGATTCGTCCGGTACCTAGTGGCCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87M29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.711

99.346

0.464
  radA Streptococcus mitis SK321

44.079

99.346

0.438
  radA Streptococcus pneumoniae Rx1

43.516

99.129

0.431
  radA Streptococcus pneumoniae D39

43.516

99.129

0.431
  radA Streptococcus pneumoniae R6

43.516

99.129

0.431
  radA Streptococcus pneumoniae TIGR4

43.516

99.129

0.431
  radA Streptococcus mitis NCTC 12261

43.516

99.129

0.431