Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JNE32_RS13515 Genome accession   NZ_CP068982
Coordinates   2563120..2563923 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558120..2568923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS13490 (JNE32_13425) glpQB 2559266..2559997 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  JNE32_RS13495 (JNE32_13430) yqiI 2560076..2560696 (-) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  JNE32_RS13500 (JNE32_13435) yqiH 2560711..2561004 (-) 294 WP_003230284.1 lipoprotein -
  JNE32_RS13505 (JNE32_13440) - 2561312..2561464 (+) 153 WP_014480226.1 hypothetical protein -
  JNE32_RS13510 (JNE32_13445) yqiG 2561537..2562655 (+) 1119 WP_015714237.1 NADH-dependent flavin oxidoreductase -
  JNE32_RS13515 (JNE32_13450) spo0A 2563120..2563923 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  JNE32_RS13520 (JNE32_13455) spoIVB 2564199..2565479 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  JNE32_RS13525 (JNE32_13460) recN 2565653..2567383 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  JNE32_RS13530 (JNE32_13465) argR 2567420..2567869 (-) 450 WP_003230265.1 arginine repressor ArgR -
  JNE32_RS13535 (JNE32_13470) yqxC 2567967..2568812 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=531732 JNE32_RS13515 WP_003226427.1 2563120..2563923(-) (spo0A) [Bacillus subtilis strain pb2441]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=531732 JNE32_RS13515 WP_003226427.1 2563120..2563923(-) (spo0A) [Bacillus subtilis strain pb2441]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAAGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1