Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JNE32_RS12525 Genome accession   NZ_CP068982
Coordinates   2386089..2386709 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381089..2391709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS12485 (JNE32_12420) ptsA 2382217..2382723 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  JNE32_RS12490 (JNE32_12425) ypqA 2382861..2383280 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  JNE32_RS12495 (JNE32_12430) sppG 2383301..2383678 (-) 378 WP_015251832.1 YppG family protein -
  JNE32_RS12500 (JNE32_12435) yppF 2383866..2384054 (+) 189 WP_003230690.1 YppF family protein -
  JNE32_RS12505 (JNE32_12440) yppE 2384096..2384467 (-) 372 WP_029726786.1 YppE family protein -
  JNE32_RS12510 (JNE32_12445) yppD 2384513..2384758 (-) 246 WP_015251831.1 YppD family protein -
  JNE32_RS12515 (JNE32_12450) sspM 2384957..2385061 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  JNE32_RS12520 (JNE32_12455) yppC 2385086..2386048 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  JNE32_RS12525 (JNE32_12460) recU 2386089..2386709 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  JNE32_RS12530 (JNE32_12465) ponA 2386731..2389475 (+) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  JNE32_RS12535 (JNE32_12470) ypoC 2389551..2390045 (-) 495 WP_029726783.1 YpoC family protein -
  JNE32_RS12540 (JNE32_12475) nth 2390042..2390701 (-) 660 WP_029726782.1 endonuclease III -
  JNE32_RS12545 (JNE32_12480) dnaD 2390720..2391418 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=531731 JNE32_RS12525 WP_004399067.1 2386089..2386709(+) (recU) [Bacillus subtilis strain pb2441]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=531731 JNE32_RS12525 WP_004399067.1 2386089..2386709(+) (recU) [Bacillus subtilis strain pb2441]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1