Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JNE32_RS07720 Genome accession   NZ_CP068982
Coordinates   1470967..1471245 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain pb2441     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465967..1476245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS07700 (JNE32_07655) panEB 1467155..1468066 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  JNE32_RS07705 (JNE32_07660) ampS 1468100..1469332 (-) 1233 WP_003232341.1 aminopeptidase -
  JNE32_RS07710 (JNE32_07665) ykpC 1469441..1469575 (-) 135 WP_003238865.1 protein YkpC -
  JNE32_RS07715 (JNE32_07670) mreBH 1469676..1470683 (-) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  JNE32_RS07720 (JNE32_07675) abrB 1470967..1471245 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  JNE32_RS07725 (JNE32_07680) kinC 1471435..1472721 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  JNE32_RS07730 (JNE32_07685) ykqA 1472737..1473563 (+) 827 Protein_1462 gamma-glutamylcyclotransferase -
  JNE32_RS07735 (JNE32_07690) ktrC 1473626..1474291 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  JNE32_RS07740 (JNE32_07695) ade 1474447..1476180 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=531725 JNE32_RS07720 WP_003244728.1 1470967..1471245(+) (abrB) [Bacillus subtilis strain pb2441]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=531725 JNE32_RS07720 WP_003244728.1 1470967..1471245(+) (abrB) [Bacillus subtilis strain pb2441]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576