Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JNE32_RS05540 Genome accession   NZ_CP068982
Coordinates   1069926..1070504 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain pb2441     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064926..1075504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE32_RS05520 (JNE32_05490) hemAT 1065436..1066734 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  JNE32_RS05525 (JNE32_05495) comW 1066873..1068402 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  JNE32_RS05530 (JNE32_05500) yhxC 1068514..1069371 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  JNE32_RS05535 (JNE32_05505) yhzC 1069399..1069633 (-) 235 Protein_1023 IDEAL domain-containing protein -
  JNE32_RS05540 (JNE32_05510) comK 1069926..1070504 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  JNE32_RS05545 (JNE32_05515) yhxD 1070551..1071450 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  JNE32_RS05550 (JNE32_05520) yhjA 1071667..1071936 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  JNE32_RS05555 (JNE32_05525) yhjB 1071980..1073449 (-) 1470 WP_029726292.1 sodium:solute symporter -
  JNE32_RS05560 (JNE32_05530) yhjC 1073446..1073646 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  JNE32_RS05565 (JNE32_05535) - 1073854..1074216 (-) 363 WP_003233132.1 hypothetical protein -
  JNE32_RS05570 (JNE32_05540) yhjE 1074368..1074991 (+) 624 WP_010886465.1 VTT domain-containing protein -
  JNE32_RS05575 (JNE32_05545) lepB 1074993..1075499 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=531711 JNE32_RS05540 WP_029317573.1 1069926..1070504(+) (comK) [Bacillus subtilis strain pb2441]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=531711 JNE32_RS05540 WP_029317573.1 1069926..1070504(+) (comK) [Bacillus subtilis strain pb2441]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995