Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   K9N54_RS01230 Genome accession   NZ_CP083361
Coordinates   260869..261342 (-) Length   157 a.a.
NCBI ID   WP_025792561.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 255869..266342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS01205 (K9N54_01210) - 256131..256937 (-) 807 WP_025792553.1 hypothetical protein -
  K9N54_RS01210 (K9N54_01215) - 257318..257974 (+) 657 WP_025792554.1 inovirus Gp2 family protein -
  K9N54_RS01215 (K9N54_01220) - 258341..259504 (-) 1164 WP_025792556.1 hypothetical protein -
  K9N54_RS01220 (K9N54_01225) - 259501..260292 (-) 792 WP_224067051.1 YafY family protein -
  K9N54_RS01225 (K9N54_01230) - 260441..260872 (-) 432 WP_017633432.1 DUF2787 family protein -
  K9N54_RS01230 (K9N54_01235) radC 260869..261342 (-) 474 WP_025792561.1 DNA repair protein RadC Machinery gene
  K9N54_RS01235 (K9N54_01240) - 261513..261662 (+) 150 WP_005489496.1 AlpA family phage regulatory protein -
  K9N54_RS01240 (K9N54_01245) - 261822..262046 (+) 225 WP_005489715.1 hypothetical protein -
  K9N54_RS01245 (K9N54_01250) hslU 262470..263801 (-) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  K9N54_RS01250 (K9N54_01255) hslV 263825..264376 (-) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  K9N54_RS01255 (K9N54_01260) ftsN 264541..265086 (-) 546 WP_005481405.1 cell division protein FtsN -
  K9N54_RS01260 (K9N54_01265) cytR 265263..266270 (-) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17690.11 Da        Isoelectric Point: 6.9794

>NTDB_id=531699 K9N54_RS01230 WP_025792561.1 260869..261342(-) (radC) [Vibrio parahaemolyticus strain 20-082E4]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALELVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=531699 K9N54_RS01230 WP_025792561.1 260869..261342(-) (radC) [Vibrio parahaemolyticus strain 20-082E4]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCGTCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGAGTTAG
TTGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.905

87.261

0.427