Detailed information NTG0531689

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: K6U01_RS21190
• Genome accession: NZ_CP083274
• Coordinates: 4383710..4384702 (+)
• Length: 330 a.a.
• NCBI ID: WP_000224456.1
• Uniprot ID: -
• Organism: Escherichia coli strain Rosetta2-DE3
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4378710..4389702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6U01_RS21165 (K6U01_21105)	rbsD	4379017..4379253 (+)	237	Protein_4179	D-ribose pyranase	-
K6U01_RS21170 (K6U01_21110)	rbsA	4379261..4380766 (+)	1506	WP_000387752.1	ribose ABC transporter ATP-binding protein RbsA	-
K6U01_RS21175 (K6U01_21115)	rbsC	4380771..4381736 (+)	966	WP_000211858.1	ribose ABC transporter permease	-
K6U01_RS21180 (K6U01_21120)	rbsB	4381761..4382651 (+)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
K6U01_RS21185 (K6U01_21125)	rbsK	4382777..4383706 (+)	930	WP_012767772.1	ribokinase	-
K6U01_RS21190 (K6U01_21130)	cytR	4383710..4384702 (+)	993	WP_000224456.1	ribose operon transcriptional repressor RbsR	Regulator
K6U01_RS21195 (K6U01_21135)	mdtD	4384668..4386095 (-)	1428	WP_001280852.1	multidrug transporter subunit MdtD	-
K6U01_RS21200 (K6U01_21140)	yieP	4386118..4386810 (-)	693	WP_001131164.1	FadR/GntR family transcriptional regulator	-
K6U01_RS21205 (K6U01_21145)	rsmC	4387347..4388378 (-)	1032	WP_001272330.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
K6U01_RS21210 (K6U01_21150)	holD	4388481..4388894 (+)	414	WP_000204012.1	DNA polymerase III subunit psi	-
K6U01_RS21215 (K6U01_21155)	rimI	4388863..4389309 (+)	447	WP_001092461.1	ribosomal protein S18-alanine N-acetyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36563.82 Da
• Isoelectric Point: 5.0711

>NTDB_id=531689 K6U01_RS21190 WP_000224456.1 4383710..4384702(+) (cytR) [Escherichia coli strain Rosetta2-DE3]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=531689 K6U01_RS21190 WP_000224456.1 4383710..4384702(+) (cytR) [Escherichia coli strain Rosetta2-DE3]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	36.747	100	0.37
cytR	Vibrio cholerae C6706	38.762	93.03	0.361