Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   P795_RS09465 Genome accession   NC_023028
Coordinates   2050104..2050739 (-) Length   211 a.a.
NCBI ID   WP_023896836.1    Uniprot ID   -
Organism   Acinetobacter baumannii ZW85-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2045104..2055739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS09440 (P795_9375) - 2045160..2046140 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  P795_RS09445 (P795_9380) kdsB 2046152..2046913 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P795_RS09450 (P795_9385) lpxK 2046923..2047933 (-) 1011 WP_023896834.1 tetraacyldisaccharide 4'-kinase -
  P795_RS09455 (P795_9390) msbA 2047936..2049663 (-) 1728 WP_023896835.1 lipid A export permease/ATP-binding protein MsbA -
  P795_RS09460 (P795_9395) - 2049660..2050088 (-) 429 WP_000669685.1 biopolymer transporter ExbD -
  P795_RS09465 (P795_9400) exbB 2050104..2050739 (-) 636 WP_023896836.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  P795_RS09470 (P795_9405) - 2050789..2051676 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  P795_RS09475 (P795_9410) - 2051673..2052455 (-) 783 WP_000057212.1 ParA family protein -
  P795_RS09480 (P795_9415) rsmG 2052477..2053109 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  P795_RS09485 (P795_9420) murU 2053197..2053886 (-) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  P795_RS09490 (P795_9425) - 2053886..2054899 (-) 1014 WP_023896837.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23214.16 Da        Isoelectric Point: 6.4825

>NTDB_id=53156 P795_RS09465 WP_023896836.1 2050104..2050739(-) (exbB) [Acinetobacter baumannii ZW85-1]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQCTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=53156 P795_RS09465 WP_023896836.1 2050104..2050739(-) (exbB) [Acinetobacter baumannii ZW85-1]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCCTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCACCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTGATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATGTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment