Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K9U36_RS04790 Genome accession   NZ_CP083273
Coordinates   984731..985171 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain BL21-RIPL     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 979731..990171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U36_RS04770 (K9U36_04765) aroP 980729..982102 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  K9U36_RS04775 (K9U36_04770) ampE 982145..982999 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  K9U36_RS04780 (K9U36_04775) ampD 982996..983547 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  K9U36_RS04785 (K9U36_04780) nadC 983635..984528 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K9U36_RS04790 (K9U36_04785) pilA 984731..985171 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  K9U36_RS04795 (K9U36_04790) pilB 985181..986566 (+) 1386 WP_001025145.1 type II secretion system protein GspE Machinery gene
  K9U36_RS04800 (K9U36_04795) hofC 986556..987758 (+) 1203 WP_000157266.1 protein transport protein HofC -
  K9U36_RS04805 (K9U36_04800) guaC 987793..988836 (-) 1044 WP_001217335.1 GMP reductase -
  K9U36_RS04810 (K9U36_04805) - 988992..989036 (-) 45 WP_120795372.1 protein YacM -
  K9U36_RS04815 (K9U36_04810) coaE 989061..989681 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=531546 K9U36_RS04790 WP_000360904.1 984731..985171(+) (pilA) [Escherichia coli strain BL21-RIPL]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=531546 K9U36_RS04790 WP_000360904.1 984731..985171(+) (pilA) [Escherichia coli strain BL21-RIPL]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363