Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JNN79_RS08250 Genome accession   NZ_CP068825
Coordinates   1764460..1765089 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RIVM_C030256     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759460..1770089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN79_RS08230 (JNN79_08230) ycbZ 1759862..1761622 (-) 1761 WP_000156482.1 Lon protease family protein -
  JNN79_RS08235 (JNN79_08235) matP 1761808..1762260 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JNN79_RS08240 (JNN79_08240) ompA 1762336..1763376 (-) 1041 WP_001309394.1 porin OmpA -
  JNN79_RS08245 (JNN79_08245) sulA 1763732..1764241 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JNN79_RS08250 (JNN79_08250) sxy/tfoX 1764460..1765089 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JNN79_RS08255 (JNN79_08255) yccS 1765052..1767214 (-) 2163 WP_000875041.1 YccS family putative transporter -
  JNN79_RS08260 (JNN79_08260) yccF 1767224..1767670 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JNN79_RS08265 (JNN79_08265) helD 1767793..1769847 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=531520 JNN79_RS08250 WP_000839153.1 1764460..1765089(+) (sxy/tfoX) [Escherichia coli strain RIVM_C030256]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=531520 JNN79_RS08250 WP_000839153.1 1764460..1765089(+) (sxy/tfoX) [Escherichia coli strain RIVM_C030256]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1