Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P795_RS08880 Genome accession   NC_023028
Coordinates   1930592..1931188 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii ZW85-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925592..1936188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P795_RS08845 (P795_8775) - 1925677..1926528 (-) 852 WP_023896780.1 MoxR family ATPase -
  P795_RS08850 (P795_8780) - 1926558..1926944 (-) 387 WP_001206390.1 hypothetical protein -
  P795_RS08855 (P795_8785) - 1926937..1927242 (-) 306 WP_000543500.1 YcgL domain-containing protein -
  P795_RS18890 (P795_8790) - 1927685..1927849 (+) 165 WP_000086293.1 hypothetical protein -
  P795_RS08865 (P795_8795) - 1927921..1928262 (-) 342 WP_025468052.1 hypothetical protein -
  P795_RS08870 (P795_8800) - 1928394..1928660 (-) 267 WP_023896781.1 hypothetical protein -
  P795_RS08875 (P795_8805) - 1929163..1930287 (-) 1125 WP_000486120.1 HRDC domain-containing protein -
  P795_RS08880 (P795_8810) recR 1930592..1931188 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  P795_RS08885 (P795_8815) - 1931198..1931527 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  P795_RS08890 (P795_8820) - 1931793..1932029 (-) 237 WP_000917295.1 hypothetical protein -
  P795_RS08895 (P795_8825) - 1932207..1933394 (-) 1188 WP_038343794.1 O-succinylhomoserine sulfhydrylase -
  P795_RS08900 (P795_8830) - 1933528..1934613 (+) 1086 WP_000825836.1 alpha/beta fold hydrolase -
  P795_RS08905 (P795_8835) - 1934694..1935461 (-) 768 WP_023896783.1 class I SAM-dependent methyltransferase -
  P795_RS08915 (P795_8845) - 1935634..1936008 (-) 375 WP_000800035.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=53151 P795_RS08880 WP_000490551.1 1930592..1931188(-) (recR) [Acinetobacter baumannii ZW85-1]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=53151 P795_RS08880 WP_000490551.1 1930592..1931188(-) (recR) [Acinetobacter baumannii ZW85-1]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCATGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCTCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGGCATCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGTATTCCTTATCTAATCCAACGTTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCTCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424