Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K5X85_RS23025 Genome accession   NZ_CP083267
Coordinates   5181710..5182693 (+) Length   327 a.a.
NCBI ID   WP_223780491.1    Uniprot ID   -
Organism   Streptomyces sp. A144     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5176710..5187693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5X85_RS23010 (K5X85_23255) - 5178161..5179789 (+) 1629 WP_030971129.1 ABC transporter substrate-binding protein -
  K5X85_RS23015 (K5X85_23260) - 5179799..5180722 (+) 924 WP_019327067.1 ABC transporter permease -
  K5X85_RS23020 (K5X85_23265) - 5180715..5181701 (+) 987 WP_019327066.1 ABC transporter permease -
  K5X85_RS23025 (K5X85_23270) amiE 5181710..5182693 (+) 984 WP_223780491.1 ABC transporter ATP-binding protein Regulator
  K5X85_RS23030 (K5X85_23275) - 5182686..5183801 (+) 1116 WP_062132241.1 ABC transporter ATP-binding protein -
  K5X85_RS23035 (K5X85_23280) - 5183930..5186056 (-) 2127 WP_223780492.1 prolyl oligopeptidase family serine peptidase -
  K5X85_RS23040 (K5X85_23285) - 5186243..5186437 (+) 195 WP_029393692.1 hypothetical protein -
  K5X85_RS23045 (K5X85_23290) mshB 5186525..5187403 (+) 879 WP_109202666.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36038.80 Da        Isoelectric Point: 6.4287

>NTDB_id=531495 K5X85_RS23025 WP_223780491.1 5181710..5182693(+) (amiE) [Streptomyces sp. A144]
MLLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTVMGILDMPPGRITAGEVLFEGRDLLKLKE
EERRKVRGAEMAMIFQDALSSLNPVLTVGDQLGEMFTVHRGMSRKDARAKAVELMDRVRIPAARERVKQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMDLLAELQREMHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTDVPPLYEVTESDAERGSACHF
WRECLHG

Nucleotide


Download         Length: 984 bp        

>NTDB_id=531495 K5X85_RS23025 WP_223780491.1 5181710..5182693(+) (amiE) [Streptomyces sp. A144]
ATGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCACACCCGGGACGGCGTCGCCAAGGCCGTCAACGGCGTCAGCTA
CGGCGTGGACGCGGGCGAGACCCTGGCCGTCCTCGGCGAGTCCGGTTCCGGCAAGTCCGTCACCGCCCAGACCGTCATGG
GCATCCTCGACATGCCGCCCGGGCGGATCACCGCGGGCGAAGTCCTCTTCGAGGGCCGGGACCTGCTGAAGCTGAAGGAG
GAGGAGCGCCGCAAGGTCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCCCTGTCCTCGCTGAACCCGGTCCTCAC
CGTCGGCGACCAGCTCGGCGAGATGTTCACCGTCCACCGGGGGATGTCCCGCAAGGACGCCCGCGCCAAGGCCGTCGAGC
TGATGGACCGCGTCCGCATCCCGGCGGCCAGGGAGCGGGTGAAGCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCCCTGGAACCGAAGCTGATCATCGCCGACGAACCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTCCTCGCGGAACTCCAGCGCGAGATGCACATGGGCCTGATCCTCATCACCCACGACC
TCGGCGTGGTCGCCGACGTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCTCCCGTCCACGAC
ATCTACAAGGCGCCCGCCCACCCCTACACCCGGGGCCTGCTGGAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCGCCTTCCACCCCCGCTGCCCGATGGCCC
AGGACGTCTGCCGCACCGACGTACCGCCCCTGTACGAGGTGACGGAGTCCGACGCGGAGCGGGGCAGCGCCTGCCACTTC
TGGAGGGAGTGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.875

97.859

0.459
  amiE Streptococcus thermophilus LMG 18311

46.25

97.859

0.453
  amiE Streptococcus thermophilus LMD-9

46.25

97.859

0.453
  oppD Streptococcus mutans UA159

47.573

94.495

0.45