Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   LMOSLCC5850_RS15090 Genome accession   NC_018592
Coordinates   316491..316700 (+) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes SLCC5850     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 311491..321700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMOSLCC5850_RS01510 (LMOSLCC5850_0289) - 312022..312852 (+) 831 WP_003722911.1 MBL fold metallo-hydrolase -
  LMOSLCC5850_RS01515 (LMOSLCC5850_0290) htrA 312950..314455 (+) 1506 WP_014930814.1 serine protease HtrA -
  LMOSLCC5850_RS01520 (LMOSLCC5850_0291) rlmH 315142..315621 (+) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LMOSLCC5850_RS14995 (LMOSLCC5850_0292) - 316060..316509 (+) 450 WP_223168478.1 recombinase family protein -
  LMOSLCC5850_RS15090 (LMOSLCC5850_0293) ccrB 316491..316700 (+) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  LMOSLCC5850_RS15005 (LMOSLCC5850_0294) - 316729..317262 (+) 534 WP_014930817.1 hypothetical protein -
  LMOSLCC5850_RS01540 (LMOSLCC5850_0295) - 317402..318514 (-) 1113 WP_014600446.1 restriction endonuclease subunit S -
  LMOSLCC5850_RS01545 (LMOSLCC5850_0296) - 318507..320126 (-) 1620 WP_014600447.1 HsdM family class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=53137 LMOSLCC5850_RS15090 WP_014930816.1 316491..316700(+) (ccrB) [Listeria monocytogenes SLCC5850]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=53137 LMOSLCC5850_RS15090 WP_014930816.1 316491..316700(+) (ccrB) [Listeria monocytogenes SLCC5850]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551

Multiple sequence alignment