Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   K3A98_RS10770 Genome accession   NZ_CP083259
Coordinates   2148765..2149847 (-) Length   360 a.a.
NCBI ID   WP_001812923.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25274     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143765..2154847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A98_RS10750 (K3A98_002138) - 2144384..2144477 (-) 94 Protein_2090 hypothetical protein -
  K3A98_RS10755 (K3A98_002139) secA 2144519..2147050 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  K3A98_RS10760 (K3A98_002140) hpf 2147465..2148037 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K3A98_RS10765 (K3A98_002141) - 2148098..2148772 (-) 675 WP_001057970.1 ComF family protein -
  K3A98_RS10770 (K3A98_002142) comFA 2148765..2149847 (-) 1083 WP_001812923.1 DEAD/DEAH box helicase Machinery gene
  K3A98_RS10775 (K3A98_002143) fakB1 2150211..2151077 (-) 867 WP_031875144.1 fatty acid kinase binding subunit FakB1 -
  K3A98_RS10780 (K3A98_002144) - 2151221..2151862 (+) 642 WP_000192950.1 YigZ family protein -
  K3A98_RS10785 (K3A98_002145) - 2152034..2153089 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  K3A98_RS10790 (K3A98_002146) gdpS 2153407..2154477 (+) 1071 WP_048667628.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41977.44 Da        Isoelectric Point: 9.5935

>NTDB_id=531347 K3A98_RS10770 WP_001812923.1 2148765..2149847(-) (comFA) [Staphylococcus aureus strain HL25274]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=531347 K3A98_RS10770 WP_001812923.1 2148765..2149847(-) (comFA) [Staphylococcus aureus strain HL25274]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGATATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367