Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   K3A98_RS04205 Genome accession   NZ_CP083259
Coordinates   850641..851351 (-) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25274     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 845641..856351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A98_RS04165 (K3A98_000825) sph 845932..846756 (-) 825 Protein_816 sphingomyelin phosphodiesterase -
  K3A98_RS04170 (K3A98_000826) - 846813..847850 (-) 1038 WP_000857181.1 tyrosine-type recombinase/integrase -
  K3A98_RS04175 (K3A98_000827) - 847913..848155 (-) 243 WP_000427213.1 hypothetical protein -
  K3A98_RS04180 (K3A98_000828) - 848166..849149 (-) 984 WP_001558608.1 glycosyltransferase family 2 protein -
  K3A98_RS04185 (K3A98_000829) - 849249..849431 (-) 183 WP_000694772.1 hypothetical protein -
  K3A98_RS04190 (K3A98_000830) - 849661..850245 (-) 585 WP_000825943.1 hypothetical protein -
  K3A98_RS04195 (K3A98_000831) - 850301..850486 (-) 186 WP_000109193.1 hypothetical protein -
  K3A98_RS04200 (K3A98_000832) - 850483..850629 (-) 147 WP_001049401.1 hypothetical protein -
  K3A98_RS04205 (K3A98_000833) irvR 850641..851351 (-) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  K3A98_RS04210 (K3A98_000834) - 851523..851762 (+) 240 WP_000548575.1 helix-turn-helix transcriptional regulator -
  K3A98_RS04215 (K3A98_000835) - 851778..851993 (+) 216 WP_001025405.1 MW1434 family type I TA system toxin -
  K3A98_RS04220 (K3A98_000836) - 851982..852311 (-) 330 WP_000128908.1 hypothetical protein -
  K3A98_RS04225 (K3A98_000837) - 852362..853114 (+) 753 WP_001148635.1 phage antirepressor KilAC domain-containing protein -
  K3A98_RS04230 (K3A98_000838) - 853130..853327 (+) 198 WP_001148862.1 hypothetical protein -
  K3A98_RS04235 (K3A98_000839) - 853314..853694 (-) 381 Protein_830 DUF2513 domain-containing protein -
  K3A98_RS04240 (K3A98_000840) - 853749..854072 (+) 324 WP_001120201.1 DUF771 domain-containing protein -
  K3A98_RS04245 (K3A98_000841) - 854069..854230 (+) 162 WP_000048129.1 DUF1270 family protein -
  K3A98_RS04250 (K3A98_000842) - 854325..854627 (+) 303 WP_000165371.1 DUF2482 family protein -
  K3A98_RS04255 (K3A98_000843) - 854632..854892 (+) 261 WP_000291510.1 DUF1108 family protein -
  K3A98_RS04260 (K3A98_000844) - 854901..855164 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=531284 K3A98_RS04205 WP_000094091.1 850641..851351(-) (irvR) [Staphylococcus aureus strain HL25274]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=531284 K3A98_RS04205 WP_000094091.1 850641..851351(-) (irvR) [Staphylococcus aureus strain HL25274]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373