Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   K8Z53_RS16960 Genome accession   NZ_CP083238
Coordinates   3223524..3226916 (+) Length   1130 a.a.
NCBI ID   WP_061576187.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3218524..3231916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS16950 (K8Z53_16770) addA 3218589..3222281 (+) 3693 WP_011197743.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  K8Z53_RS16955 (K8Z53_16775) sbcD 3222346..3223527 (+) 1182 WP_073426309.1 exonuclease subunit SbcD -
  K8Z53_RS16960 (K8Z53_16780) sbcC 3223524..3226916 (+) 3393 WP_061576187.1 exonuclease subunit SbcC Machinery gene
  K8Z53_RS16965 (K8Z53_16785) - 3226961..3227179 (-) 219 WP_142782039.1 spore germination protein -
  K8Z53_RS16970 (K8Z53_16790) - 3227235..3227621 (-) 387 WP_009328894.1 spore germination protein GerPE -
  K8Z53_RS16975 (K8Z53_16795) - 3227618..3227797 (-) 180 WP_009328893.1 germination protein GerPD -
  K8Z53_RS16980 (K8Z53_16800) - 3227794..3228390 (-) 597 WP_073426273.1 spore germination protein GerPC -
  K8Z53_RS16985 (K8Z53_16805) - 3228411..3228653 (-) 243 WP_142782038.1 spore germination protein GerPB -
  K8Z53_RS16990 (K8Z53_16810) - 3228665..3228886 (-) 222 WP_003180445.1 spore germination protein -
  K8Z53_RS16995 (K8Z53_16815) - 3229068..3229361 (+) 294 WP_009328891.1 DUF3784 domain-containing protein -
  K8Z53_RS17000 (K8Z53_16820) - 3229443..3229622 (-) 180 WP_011197747.1 aspartyl-phosphate phosphatase Spo0E family protein -
  K8Z53_RS17005 (K8Z53_16825) - 3229789..3230862 (-) 1074 WP_061576188.1 CotH kinase family protein -
  K8Z53_RS17010 (K8Z53_16830) cotG 3231028..3231534 (+) 507 WP_009328889.1 spore coat protein CotG -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129073.72 Da        Isoelectric Point: 5.3843

>NTDB_id=531236 K8Z53_RS16960 WP_061576187.1 3223524..3226916(+) (sbcC) [Bacillus licheniformis strain 2709]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQSRKNEMLAEQAGLGDAGEEALKLAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRKANQLAFHIQQLNSDAALEKKRLDQQEALIKELRQEQQAVDQKVKDETERIQALF
AAVERAYALVCETDRSLSETVRLATQKKEEIVAKRKQANRDQLAIELAKQLKEGEPCPVCGSVHHEMPAGDGTESPSFKE
TESELEKTEAIIAEAGALAQEFLSAKVALEQQSGHLMSECPFLVKSKHELPETAASLEEGTIPERFSRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKEQNRLQNRVRELNDELNERQKSFGEQFGGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVEFLTEHEQQKEKLTERLFALDKEKLDLHYAVESLKKDINDYQKELTGYPDTAAIDEKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKAGGTPFEKASEVKASILDRDELSRLKEDIQ
LYWDHTKQCESNIKRITEKLDGRSVSEENWEKAAVTKDQAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=531236 K8Z53_RS16960 WP_061576187.1 3223524..3226916(+) (sbcC) [Bacillus licheniformis strain 2709]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTGATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGAAAATTCGCCGAATTTCTTTCCTTG
AAAGGAGCGGAGCGAAGGCAGATGCTTCAGCGCCTGTTCAACCTTGAACAATACGGGGACAGGCTCGTCAAAAAACTAAA
GAAACAGGCGCAAACAGCTCAGTCCAGAAAAAACGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAGCTGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGCTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAACTGGCCAAGGTGAAAAGCCTGCTTGAACGCGGG
ACAGCCAAGCAAAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCCAGCGAAGAGCGCAAAAACTGCCGGAAGGC
CAATCAGCTTGCTTTTCACATTCAGCAGCTTAACAGCGATGCCGCTTTAGAAAAAAAACGGCTCGATCAGCAGGAGGCGC
TGATCAAAGAGCTCCGGCAAGAACAGCAAGCGGTGGATCAGAAGGTGAAGGATGAAACCGAACGCATCCAGGCATTGTTT
GCCGCTGTCGAACGAGCGTATGCGCTCGTTTGCGAAACGGACAGATCGCTCTCTGAGACCGTCCGTCTCGCGACTCAAAA
GAAAGAAGAGATTGTCGCAAAACGGAAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGAGG
GTGAGCCTTGTCCGGTCTGCGGGTCTGTACATCATGAAATGCCCGCGGGTGACGGTACGGAAAGCCCGTCCTTTAAAGAG
ACGGAATCCGAACTGGAGAAAACGGAAGCCATCATCGCAGAAGCCGGCGCGCTGGCTCAGGAGTTTCTCTCAGCCAAAGT
GGCGCTCGAACAGCAGTCCGGCCACCTGATGAGCGAATGCCCGTTTTTAGTCAAAAGCAAACACGAACTGCCTGAAACTG
CTGCATCGCTAGAAGAAGGCACCATTCCCGAACGGTTCAGCCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCCGAGACAAAAAGCCGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAAAAACGCGACCAAATCAGCGAACG
CCTCAGCCATGAAGAAAAAGAGCAAAACAGGCTTCAAAACCGCGTCCGCGAATTGAATGACGAGTTAAATGAACGCCAAA
AAAGTTTCGGCGAACAATTCGGCGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGAATCGAAACGAGCGTCGAATTTCTCACGGAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTTGACCTTCATTATGCGGTCGAAAGCCTCAAAAAAGACATAAACGATT
ATCAAAAAGAGCTGACGGGCTATCCCGATACAGCTGCGATCGACGAAAAGCTTCAAGACGTGAAAACGCAGTTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAGGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAAGCCGGAGGCA
CACCGTTCGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTGGACCGCGATGAGCTTTCCCGGCTGAAAGAAGACATTCAA
CTGTATTGGGATCACACAAAGCAGTGCGAGTCCAATATCAAGCGAATTACGGAAAAGCTTGACGGCAGATCTGTTTCTGA
AGAGAATTGGGAAAAAGCCGCAGTCACGAAGGACCAGGCGGAGGAGGCATTCAGCAAAGCTCTAGAGGAAAGGGGAGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GCTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGCGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)

AAA domain (AAA_23)

(5-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.549

100

0.565