Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K8Z53_RS03285 Genome accession   NZ_CP083238
Coordinates   572226..573044 (+) Length   272 a.a.
NCBI ID   WP_003183804.1    Uniprot ID   Q65GX9
Organism   Bacillus licheniformis strain 2709     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 567226..578044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS03265 (K8Z53_03225) - 567465..568514 (-) 1050 WP_061576859.1 NAD(P)/FAD-dependent oxidoreductase -
  K8Z53_RS03270 (K8Z53_03230) nikA 568804..570426 (+) 1623 WP_142782499.1 nickel ABC transporter substrate-binding protein -
  K8Z53_RS03275 (K8Z53_03235) nikB 570436..571380 (+) 945 WP_061576861.1 nickel ABC transporter permease subunit NikB -
  K8Z53_RS03280 (K8Z53_03240) nikC 571377..572210 (+) 834 WP_142782498.1 nickel ABC transporter permease subunit NikC -
  K8Z53_RS03285 (K8Z53_03245) amiE 572226..573044 (+) 819 WP_003183804.1 nickel import ATP-binding protein NikD Regulator
  K8Z53_RS03290 (K8Z53_03250) nikE 573086..573904 (+) 819 WP_003183807.1 nickel import ATP-binding protein NikE -
  K8Z53_RS03295 (K8Z53_03255) - 574217..575053 (+) 837 WP_003183808.1 MerR family transcriptional regulator -
  K8Z53_RS03300 (K8Z53_03260) - 575110..576465 (+) 1356 WP_142782497.1 MATE family efflux transporter -
  K8Z53_RS03305 (K8Z53_03265) - 576779..577786 (+) 1008 Protein_658 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 30149.90 Da        Isoelectric Point: 8.4839

>NTDB_id=531159 K8Z53_RS03285 WP_003183804.1 572226..573044(+) (amiE) [Bacillus licheniformis strain 2709]
MGTEQSTVLRVRDLHVQVNNQKGHSTLVQDINFDLKRGQVLGLIGESGCGKTVTSMSILQTLDPKTTKVEGSIALRGREL
NGLADKEMRKIRGKDIAYIMQNPMNAFTPVFTIGQQMTESIRSHTSFSKKQAKELATEALHHVNLPHPAKLLHSYPFQLS
GGMLQRVMIAIASCLKPAILIADEPTTALDVYNQKTVLKYLDGMRSDFGTAILLISHDLGVIAEMADEVAVMQNGRIVEN
RDVFQLFDEPKHEYTKKLLSARLTLPVDQLAT

Nucleotide


Download         Length: 819 bp        

>NTDB_id=531159 K8Z53_RS03285 WP_003183804.1 572226..573044(+) (amiE) [Bacillus licheniformis strain 2709]
TTGGGAACAGAACAATCAACGGTGCTTCGAGTCAGAGATTTGCATGTACAGGTTAACAACCAAAAAGGACATTCAACCCT
TGTGCAAGACATCAATTTTGATTTGAAGCGCGGCCAAGTCCTTGGTCTGATTGGTGAGAGCGGTTGCGGAAAAACGGTAA
CAAGCATGTCTATTCTTCAGACGCTTGATCCAAAAACAACTAAGGTGGAAGGAAGTATTGCATTGCGAGGCCGTGAATTG
AACGGATTAGCAGATAAGGAAATGCGTAAAATCCGCGGCAAAGATATTGCCTATATCATGCAAAATCCGATGAACGCTTT
TACACCCGTTTTTACGATAGGACAGCAAATGACCGAATCGATTCGCTCTCATACATCTTTTAGCAAGAAACAGGCGAAAG
AGCTTGCGACCGAAGCATTGCATCATGTGAACCTACCCCACCCTGCTAAACTTTTACATTCTTATCCTTTTCAATTAAGC
GGCGGAATGCTTCAACGGGTCATGATTGCAATTGCATCATGCTTAAAGCCTGCCATTCTCATCGCGGATGAGCCTACCAC
TGCGCTCGACGTGTATAATCAGAAGACGGTGCTGAAATATTTAGACGGCATGCGTTCTGACTTCGGCACGGCGATTTTGC
TTATATCTCATGACCTCGGCGTTATTGCTGAAATGGCGGATGAAGTTGCTGTGATGCAGAATGGGAGAATTGTAGAAAAT
AGAGATGTGTTTCAGCTGTTTGATGAACCAAAGCATGAATATACTAAGAAGCTATTAAGTGCACGGTTGACATTGCCGGT
GGATCAACTTGCGACTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(29-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

40.37

99.265

0.401
  oppD Streptococcus mutans UA159

40.385

95.588

0.386
  amiE Streptococcus thermophilus LMG 18311

40.076

96.324

0.386
  amiE Streptococcus thermophilus LMD-9

40.076

96.324

0.386