Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   K8Z53_RS00185 Genome accession   NZ_CP083238
Coordinates   26907..28055 (-) Length   382 a.a.
NCBI ID   WP_061576211.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 21907..33055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS00160 (K8Z53_00155) - 21997..22650 (+) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -
  K8Z53_RS00165 (K8Z53_00160) - 22932..23330 (+) 399 WP_003180652.1 thiol management oxidoreductase -
  K8Z53_RS00170 (K8Z53_00165) spxH 23327..24229 (+) 903 WP_009328822.1 protease adaptor protein SpxH -
  K8Z53_RS00175 - 24641..24808 (+) 168 WP_009328823.1 hypothetical protein -
  K8Z53_RS00180 (K8Z53_00170) pepF 24865..26694 (-) 1830 WP_313770573.1 oligoendopeptidase F Regulator
  K8Z53_RS00185 (K8Z53_00175) coiA 26907..28055 (-) 1149 WP_061576211.1 competence protein CoiA family protein Machinery gene
  K8Z53_RS00190 (K8Z53_00180) - 28173..29768 (+) 1596 WP_009328826.1 sensor histidine kinase -
  K8Z53_RS00195 (K8Z53_00185) - 29791..30507 (+) 717 WP_009328827.1 response regulator -
  K8Z53_RS00200 (K8Z53_00190) - 30527..32032 (-) 1506 WP_009328828.1 tripartite tricarboxylate transporter permease -
  K8Z53_RS00205 (K8Z53_00195) - 32055..32510 (-) 456 WP_009328829.1 tripartite tricarboxylate transporter TctB family protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 44705.05 Da        Isoelectric Point: 9.9197

>NTDB_id=531130 K8Z53_RS00185 WP_061576211.1 26907..28055(-) (coiA) [Bacillus licheniformis strain 2709]
MFSAMIDQGGTICLADGYKAEDLKRLRKRHAFYCPVCRCELDLKIGSVKLPHFAHKPDAACPVPHEPESPYHLKGKRLLY
EWLGRQGLRPVLEPYLQEIRQRPDLLLEHGTRQVAVEFQCANLNAAAYRKRTEGFLRLGIEPVWILGGNRIKRLTGDLFQ
LSRFHWQFIQKSDKPPKLLFFCPEQKAFIILEHLIPFQTNKTSASLRFLPLAEASWRNVTERESRSPLQLKGWKKNILSF
RMSAVRFLSKETKQIAALFYENHQLPLPFFPSEAFLPVPSGYIFAHPVYVWQGYLFLFITKHDTFRLQSALHYMDWLIKG
KRLKLRWSGRQTAADAVGEYICFLHKKGFLVRKEEFYYSEGSFVPEPRLEALLKRDEHYFSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=531130 K8Z53_RS00185 WP_061576211.1 26907..28055(-) (coiA) [Bacillus licheniformis strain 2709]
ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTGCCTTGCCGACGGATACAAAGCCGAAGATCTCAAGCGATTGAG
AAAAAGACATGCATTTTACTGCCCGGTGTGCCGGTGTGAACTCGACCTGAAAATCGGTTCCGTCAAGCTTCCGCATTTCG
CTCATAAGCCGGATGCAGCATGTCCGGTGCCCCATGAACCGGAGAGCCCCTATCACCTGAAAGGAAAGCGGCTGTTGTAC
GAATGGCTTGGCAGACAAGGACTCCGCCCGGTGCTTGAACCGTATTTGCAAGAGATCAGACAAAGGCCCGATTTGCTGCT
GGAACACGGAACCCGCCAGGTTGCGGTTGAATTTCAATGTGCGAATCTCAATGCCGCAGCGTATCGCAAAAGGACGGAAG
GCTTTCTCAGACTGGGAATCGAGCCCGTATGGATTCTCGGCGGAAACCGGATAAAACGCTTGACGGGGGATTTATTTCAG
CTTTCGCGGTTTCACTGGCAGTTCATTCAGAAAAGCGACAAGCCCCCAAAGCTCCTGTTTTTTTGCCCCGAACAAAAGGC
TTTCATCATCCTCGAACACCTCATTCCCTTTCAAACAAACAAAACATCCGCATCCTTGCGCTTTCTTCCTCTTGCTGAAG
CAAGCTGGCGTAATGTAACAGAACGAGAAAGCCGTTCGCCTCTCCAGCTCAAAGGCTGGAAAAAGAACATCCTCAGCTTT
CGGATGTCGGCCGTGCGTTTTTTATCAAAAGAAACGAAGCAGATTGCCGCCCTCTTTTATGAAAATCATCAGCTTCCGCT
CCCGTTTTTTCCCTCAGAAGCCTTTCTCCCGGTGCCGTCAGGCTATATTTTTGCCCACCCGGTTTATGTATGGCAAGGGT
ACCTTTTTTTATTTATAACGAAGCATGATACGTTTCGCCTGCAGTCTGCGCTTCACTATATGGACTGGCTCATCAAGGGC
AAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACGGCTGCGGATGCCGTCGGTGAATACATTTGTTTTTTGCATAAAAA
AGGATTTTTGGTGAGGAAAGAGGAATTTTATTATTCCGAGGGTTCTTTTGTTCCGGAGCCGCGGTTAGAGGCGCTGTTAA
AAAGGGATGAACATTATTTTTCCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

42.382

94.503

0.401