Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   K9O37_RS03170 Genome accession   NZ_CP083181
Coordinates   653950..654465 (-) Length   171 a.a.
NCBI ID   WP_000477150.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 648950..659465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS03145 (K9O37_03145) - 649497..651140 (+) 1644 WP_024436823.1 nitrite/sulfite reductase -
  K9O37_RS03150 (K9O37_03150) - 651133..651618 (+) 486 WP_000935245.1 DUF934 domain-containing protein -
  K9O37_RS03155 (K9O37_03155) - 651700..652053 (+) 354 WP_000457784.1 DMT family transporter -
  K9O37_RS03160 (K9O37_03160) - 652099..652539 (-) 441 Protein_602 VOC family protein -
  K9O37_RS03165 (K9O37_03165) - 652666..653841 (-) 1176 WP_000129973.1 thiolase family protein -
  K9O37_RS03170 (K9O37_03170) fimT 653950..654465 (-) 516 WP_000477150.1 GspH/FimT family pseudopilin Machinery gene
  K9O37_RS03175 (K9O37_03175) omp38 654848..655891 (+) 1044 WP_000777884.1 outer membrane protein Omp38 -
  K9O37_RS03180 (K9O37_03180) - 656016..656159 (-) 144 WP_162541494.1 hypothetical protein -
  K9O37_RS03185 (K9O37_03185) - 656178..657382 (-) 1205 Protein_607 RtcB family protein -
  K9O37_RS03190 (K9O37_03190) - 657659..659119 (-) 1461 WP_002133917.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19640.87 Da        Isoelectric Point: 8.8196

>NTDB_id=531073 K9O37_RS03170 WP_000477150.1 653950..654465(-) (fimT) [Acinetobacter baumannii strain AB43]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQFKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=531073 K9O37_RS03170 WP_000477150.1 653950..654465(-) (fimT) [Acinetobacter baumannii strain AB43]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGTTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427