Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LMOSLCC5850_RS01210 Genome accession   NC_018592
Coordinates   247187..248560 (+) Length   457 a.a.
NCBI ID   WP_014600421.1    Uniprot ID   A0A3Q0NB44
Organism   Listeria monocytogenes SLCC5850     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242187..253560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMOSLCC5850_RS01190 (LMOSLCC5850_0223) - 242542..243000 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  LMOSLCC5850_RS01195 (LMOSLCC5850_0224) - 243013..243531 (+) 519 WP_003732822.1 UvrB/UvrC motif-containing protein -
  LMOSLCC5850_RS01200 (LMOSLCC5850_0225) - 243528..244550 (+) 1023 WP_014600420.1 protein arginine kinase -
  LMOSLCC5850_RS01205 (LMOSLCC5850_0226) - 244579..247041 (+) 2463 WP_003723897.1 ATP-dependent Clp protease ATP-binding subunit -
  LMOSLCC5850_RS01210 (LMOSLCC5850_0227) radA 247187..248560 (+) 1374 WP_014600421.1 DNA repair protein RadA Machinery gene
  LMOSLCC5850_RS01215 - 248694..249766 (+) 1073 Protein_225 PIN/TRAM domain-containing protein -
  LMOSLCC5850_RS01220 (LMOSLCC5850_0230) ispD 249786..250484 (+) 699 WP_003723900.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LMOSLCC5850_RS01225 (LMOSLCC5850_0231) ispF 250477..250950 (+) 474 WP_003732825.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LMOSLCC5850_RS01230 (LMOSLCC5850_0232) gltX 250969..252444 (+) 1476 WP_014600422.1 glutamate--tRNA ligase -
  LMOSLCC5850_RS01235 (LMOSLCC5850_0233) epsC 252842..253456 (+) 615 WP_012951129.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49991.67 Da        Isoelectric Point: 8.2189

>NTDB_id=53105 LMOSLCC5850_RS01210 WP_014600421.1 247187..248560(+) (radA) [Listeria monocytogenes SLCC5850]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLKVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=53105 LMOSLCC5850_RS01210 WP_014600421.1 247187..248560(+) (radA) [Listeria monocytogenes SLCC5850]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCAAAATGGATGGGAAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTAGAAGCCTTAGAACCGTCAAAAAAATCACGCTCAGCTTTCAATCATACAGGAG
AGCCTTCAAAAGCGACTCCAATTACTCAAATAGCAAGTGAAACAGAAAAACGAGTTGAAACAAATATGCCCGAGTTAAAT
AGAGTTCTTGGTGGCGGTGTGGTTCCTGGGTCTATGGTACTTGTCGGAGGAGACCCTGGTATTGGTAAATCAACATTGTT
ATTACAAGTATCAGCGCAACTCACGCTTACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCAATCAAACAAACGA
AGCTACGGGCAGAACGCTTAAAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTAAAACCTGATTTTGTAGTCATTGACTCTATTCAGACTGTTTATCATCCTGATGTTACAAGTGCAGC
AGGGAGTGTTTCTCAAGTTAGGGAATGTACAGCGACATTGATGCGAATTGCTAAAATGCAAAACATCGCTATCTTTATTG
TTGGGCATGTAACTAAGGAAGGTGCTATTGCGGGACCGCGCCTATTAGAACATATGGTTGATACTGTACTCTATTTTGAA
GGGGAGCGTCACCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTAGGACTTGTTGAAGTTGCTAATCCTTCCGAGGTATTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGCCCCGTCCTTGTGGAAATACAAGCGCTTGTTTCGCCAACGATGTTCGGT
AATGCTAAGCGAATGGCGACGGGAATAGACTACAACAAAGTTTCGCTAATTATGGCTGTTTTAGAAAAGCGAGTAGGTTT
AATGTTGCAAAACCAAGATGCTTATTTGAAAGCGGCGGGCGGGGTTAAATTGGATGAGCCTGCAGTGGATTTGGCGGTTG
CAGTCAGTGTTGCATCTAGTTATCGTGATAAACCCACAAGAAGTACGGACTGCTTTATTGGGGAACTTGGACTTACAGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTACAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCTAA
AAATAACGAAGGTAATTGGAAAATACCGAAAGACGTGCAAGTGGTTGGGGTGGAAACGATTGGAGAAGCTTTGAAGAAAG
CTTTACCAGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0NB44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.421

99.781

0.683
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643

Multiple sequence alignment