Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JNN34_RS14415 Genome accession   NZ_CP068803
Coordinates   2960177..2960806 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RIVM_C018404     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955177..2965806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN34_RS14400 (JNN34_14400) helD 2955419..2957473 (-) 2055 WP_000420536.1 DNA helicase IV -
  JNN34_RS14405 (JNN34_14405) yccF 2957596..2958042 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JNN34_RS14410 (JNN34_14410) yccS 2958052..2960214 (+) 2163 WP_000875015.1 YccS family putative transporter -
  JNN34_RS14415 (JNN34_14415) sxy/tfoX 2960177..2960806 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JNN34_RS14420 (JNN34_14420) sulA 2961025..2961534 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JNN34_RS14425 (JNN34_14425) ompA 2961891..2962943 (+) 1053 WP_000750419.1 porin OmpA -
  JNN34_RS14430 (JNN34_14430) matP 2963018..2963470 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JNN34_RS14435 (JNN34_14435) ycbZ 2963656..2965416 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=531043 JNN34_RS14415 WP_000839153.1 2960177..2960806(-) (sxy/tfoX) [Escherichia coli strain RIVM_C018404]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=531043 JNN34_RS14415 WP_000839153.1 2960177..2960806(-) (sxy/tfoX) [Escherichia coli strain RIVM_C018404]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1