Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K9C16_RS10985 Genome accession   NZ_CP082952
Coordinates   2292438..2293073 (-) Length   211 a.a.
NCBI ID   WP_057078064.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Cl300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287438..2298073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS10960 (K9C16_10915) - 2287494..2288474 (-) 981 WP_001075409.1 DNA polymerase III subunit delta' -
  K9C16_RS10965 (K9C16_10920) kdsB 2288486..2289247 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K9C16_RS10970 (K9C16_10925) lpxK 2289257..2290267 (-) 1011 WP_000050463.1 tetraacyldisaccharide 4'-kinase -
  K9C16_RS10975 (K9C16_10930) msbA 2290270..2291997 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  K9C16_RS10980 (K9C16_10935) - 2291994..2292422 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  K9C16_RS10985 (K9C16_10940) exbB 2292438..2293073 (-) 636 WP_057078064.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K9C16_RS10990 (K9C16_10945) - 2293123..2294010 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  K9C16_RS10995 (K9C16_10950) - 2294007..2294789 (-) 783 WP_000057212.1 ParA family protein -
  K9C16_RS11000 (K9C16_10955) rsmG 2294811..2295443 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  K9C16_RS11005 (K9C16_10960) murU 2295531..2296220 (-) 690 WP_000646457.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  K9C16_RS11010 (K9C16_10965) - 2296220..2297233 (-) 1014 WP_001096101.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23226.22 Da        Isoelectric Point: 7.3214

>NTDB_id=531020 K9C16_RS10985 WP_057078064.1 2292438..2293073(-) (exbB) [Acinetobacter baumannii strain Cl300]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLKQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIECFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=531020 K9C16_RS10985 WP_057078064.1 2292438..2293073(-) (exbB) [Acinetobacter baumannii strain Cl300]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGAAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTGTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.979

90.521

0.398