Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JNN40_RS06205 Genome accession   NZ_CP068802
Coordinates   1251819..1252448 (-) Length   209 a.a.
NCBI ID   WP_202859923.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C018249     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1246819..1257448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN40_RS06190 (JNN40_06190) helD 1247061..1249115 (-) 2055 WP_000420538.1 DNA helicase IV -
  JNN40_RS06195 (JNN40_06195) yccF 1249238..1249684 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JNN40_RS06200 (JNN40_06200) yccS 1249694..1251856 (+) 2163 WP_000875041.1 YccS family putative transporter -
  JNN40_RS06205 (JNN40_06205) sxy/tfoX 1251819..1252448 (-) 630 WP_202859923.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JNN40_RS06210 (JNN40_06210) sulA 1252667..1253176 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JNN40_RS06215 (JNN40_06215) ompA 1253533..1254585 (+) 1053 WP_000750418.1 porin OmpA -
  JNN40_RS06220 (JNN40_06220) matP 1254661..1255113 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JNN40_RS06225 (JNN40_06225) ycbZ 1255299..1257059 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24083.02 Da        Isoelectric Point: 9.4081

>NTDB_id=531011 JNN40_RS06205 WP_202859923.1 1251819..1252448(-) (sxy/tfoX) [Escherichia coli strain RIVM_C018249]
MKSLSYKRIYKSQEYLATLGTIEYRSLVGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLTKYSLDAALKVKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=531011 JNN40_RS06205 WP_202859923.1 1251819..1252448(-) (sxy/tfoX) [Escherichia coli strain RIVM_C018249]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GGTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGACGAAATATTCTCTCGATGCAGCGCT
GAAAGTGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986