Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   K9C16_RS04605 Genome accession   NZ_CP082952
Coordinates   976543..977931 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain Cl300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 971543..982931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9C16_RS04580 (K9C16_04585) fdhD 971975..972766 (+) 792 WP_029423979.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  K9C16_RS04585 (K9C16_04590) - 972886..973278 (+) 393 WP_000119198.1 YkvA family protein -
  K9C16_RS04590 (K9C16_04595) - 973383..974450 (+) 1068 WP_224355851.1 4-phosphoerythronate dehydrogenase -
  K9C16_RS04595 (K9C16_04600) epmA 974447..975421 (+) 975 WP_029423977.1 EF-P lysine aminoacylase EpmA -
  K9C16_RS04600 (K9C16_04605) - 975480..976460 (-) 981 WP_000451853.1 Tim44 domain-containing protein -
  K9C16_RS04605 (K9C16_04610) radA/sms 976543..977931 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  K9C16_RS04610 (K9C16_04615) - 978421..979827 (+) 1407 WP_000070815.1 amino acid permease -
  K9C16_RS04615 (K9C16_04620) lptM 979968..980192 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  K9C16_RS04620 (K9C16_04625) lysA 980215..981465 (+) 1251 WP_000011145.1 diaminopimelate decarboxylase -
  K9C16_RS04625 (K9C16_04630) dapF 981471..982316 (+) 846 WP_000923480.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=531001 K9C16_RS04605 WP_000048860.1 976543..977931(-) (radA/sms) [Acinetobacter baumannii strain Cl300]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=531001 K9C16_RS04605 WP_000048860.1 976543..977931(-) (radA/sms) [Acinetobacter baumannii strain Cl300]
ATGAGCAAAGTCAAAACCGTTTACCGTTGTGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAGCTAGAACCCACTACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAGACCCGTTTGCCAACAGGCATTAGCGAA
TTTGACAGAGTGCTTGGCGGTGGTTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
TATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTACATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCTCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATCTTGGATTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGCGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATTAGCCGTGAAGGAACCCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGTTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCAGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTCAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422