Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K8227_RS01985 Genome accession   NZ_CP082948
Coordinates   400066..400683 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain SZ1908     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 395066..405683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8227_RS01965 (K8227_01970) - 395901..396734 (+) 834 WP_011921979.1 energy-coupling factor transporter transmembrane protein EcfT -
  K8227_RS01970 (K8227_01975) - 396894..397097 (+) 204 WP_004195223.1 cold-shock protein -
  K8227_RS01975 (K8227_01980) rsmG 397139..397852 (-) 714 WP_011921980.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  K8227_RS01980 (K8227_01985) pbp1a 397911..400085 (-) 2175 WP_014636231.1 penicillin-binding protein PBP1A -
  K8227_RS01985 (K8227_01990) recU 400066..400683 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  K8227_RS01990 (K8227_01995) - 400749..401288 (+) 540 WP_004194171.1 DUF1273 domain-containing protein -
  K8227_RS01995 (K8227_02000) gpsB 401359..401694 (+) 336 WP_004194167.1 cell division regulator GpsB -
  K8227_RS02005 (K8227_02010) - 402251..403417 (+) 1167 WP_011921983.1 class I SAM-dependent RNA methyltransferase -
  K8227_RS02010 (K8227_02015) - 403427..404881 (+) 1455 WP_011921984.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=530906 K8227_RS01985 WP_004194173.1 400066..400683(-) (recU) [Streptococcus suis strain SZ1908]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=530906 K8227_RS01985 WP_004194173.1 400066..400683(-) (recU) [Streptococcus suis strain SZ1908]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473