Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   K8351_RS02515 Genome accession   NZ_CP082947
Coordinates   461053..461640 (+) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain C203016     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456053..466640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8351_RS02500 (K8351_02485) ctsR 458760..459071 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  K8351_RS02505 (K8351_02490) ctsD 459049..460467 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  K8351_RS02510 (K8351_02495) ctsP 460460..461056 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  K8351_RS02515 (K8351_02500) ctsX 461053..461640 (+) 588 WP_002810825.1 CDC27 family protein Machinery gene
  K8351_RS02520 (K8351_02505) ctsE 461633..463195 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  K8351_RS02525 (K8351_02510) ctsF 463182..464357 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  K8351_RS02530 (K8351_02515) - 464354..465118 (-) 765 WP_002784060.1 TSUP family transporter -
  K8351_RS02535 (K8351_02520) - 465121..465885 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=530841 K8351_RS02515 WP_002810825.1 461053..461640(+) (ctsX) [Campylobacter coli strain C203016]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=530841 K8351_RS02515 WP_002810825.1 461053..461640(+) (ctsX) [Campylobacter coli strain C203016]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436