Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   JM957_RS06785 Genome accession   NZ_CP068724
Coordinates   1306210..1306533 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain AFA01     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301210..1311533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM957_RS06760 - 1301487..1302773 (+) 1287 WP_000247030.1 D-alanyl-D-alanine carboxypeptidase family protein -
  JM957_RS06765 - 1302964..1303533 (+) 570 WP_000767792.1 signal peptidase I -
  JM957_RS06770 - 1303594..1304181 (+) 588 WP_000172852.1 CalY family protein -
  JM957_RS06775 - 1304316..1305158 (+) 843 WP_065382162.1 DUF4047 domain-containing protein -
  JM957_RS06780 calY 1305544..1306137 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  JM957_RS06785 sinR 1306210..1306533 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  JM957_RS06790 - 1306613..1306747 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  JM957_RS06795 inhA1 1307090..1309480 (+) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  JM957_RS06800 - 1309652..1311019 (+) 1368 WP_000028375.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=530740 JM957_RS06785 WP_000578885.1 1306210..1306533(-) (sinR) [Bacillus cereus strain AFA01]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=530740 JM957_RS06785 WP_000578885.1 1306210..1306533(-) (sinR) [Bacillus cereus strain AFA01]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692