Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JM956_RS21050 Genome accession   NZ_CP068719
Coordinates   4145377..4145811 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain 21155     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4140377..4150811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS21035 - 4141556..4142113 (+) 558 WP_000062058.1 PadR family transcriptional regulator -
  JM956_RS21040 metE 4142624..4144912 (+) 2289 WP_001007627.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  JM956_RS21045 comJ 4144951..4145340 (-) 390 WP_000424030.1 competence protein ComJ -
  JM956_RS21050 nucA/comI 4145377..4145811 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  JM956_RS21055 - 4146048..4146797 (+) 750 WP_000388466.1 DUF3967 domain-containing protein -
  JM956_RS21060 kinB 4146836..4148110 (-) 1275 WP_000420360.1 sporulation sensor histidine kinase KinB -
  JM956_RS21065 - 4148421..4148621 (+) 201 WP_000929280.1 hypothetical protein -
  JM956_RS21070 - 4148744..4149907 (+) 1164 WP_000434579.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=530701 JM956_RS21050 WP_000811494.1 4145377..4145811(-) (nucA/comI) [Bacillus cereus strain 21155]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=530701 JM956_RS21050 WP_000811494.1 4145377..4145811(-) (nucA/comI) [Bacillus cereus strain 21155]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549