Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JM956_RS13000 Genome accession   NZ_CP068719
Coordinates   2496658..2496936 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain 21155     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2491658..2501936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS12975 pepD 2491670..2493139 (+) 1470 WP_202822719.1 beta-Ala-His dipeptidase -
  JM956_RS12980 - 2493384..2494193 (+) 810 WP_202822720.1 papain-like cysteine protease family protein -
  JM956_RS12985 - 2494219..2494821 (+) 603 WP_076876379.1 hypothetical protein -
  JM956_RS12990 - 2495011..2495262 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  JM956_RS12995 - 2495639..2496517 (+) 879 WP_202822721.1 helix-turn-helix domain-containing protein -
  JM956_RS13000 abrB 2496658..2496936 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JM956_RS13005 - 2497457..2498707 (+) 1251 WP_202822722.1 hypothetical protein -
  JM956_RS13010 - 2498775..2499533 (+) 759 WP_000347987.1 TSUP family transporter -
  JM956_RS13015 - 2499787..2500446 (+) 660 WP_202822723.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=530693 JM956_RS13000 WP_000842216.1 2496658..2496936(+) (abrB) [Bacillus cereus strain 21155]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=530693 JM956_RS13000 WP_000842216.1 2496658..2496936(+) (abrB) [Bacillus cereus strain 21155]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489