Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JM956_RS09750 Genome accession   NZ_CP068719
Coordinates   1889575..1889862 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus cereus strain 21155     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884575..1894862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM956_RS09730 - 1885751..1885948 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  JM956_RS09735 - 1885980..1886441 (+) 462 WP_202822549.1 NUDIX hydrolase -
  JM956_RS09740 nadE 1886491..1887309 (-) 819 WP_000174891.1 ammonia-dependent NAD(+) synthetase -
  JM956_RS09745 - 1887579..1889459 (+) 1881 WP_202822550.1 ABC transporter permease -
  JM956_RS09750 abrB 1889575..1889862 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JM956_RS09755 - 1890137..1891084 (+) 948 WP_000099756.1 serine protease -
  JM956_RS09760 - 1891126..1891434 (-) 309 WP_046945368.1 helix-turn-helix transcriptional regulator -
  JM956_RS09765 - 1891541..1892476 (+) 936 WP_202822551.1 aldo/keto reductase -
  JM956_RS09770 - 1892524..1893699 (+) 1176 WP_001077918.1 MFS transporter -
  JM956_RS31685 - 1893748..1893954 (+) 207 WP_001101743.1 hypothetical protein -
  JM956_RS09775 - 1894098..1894460 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=530692 JM956_RS09750 WP_000648325.1 1889575..1889862(+) (abrB) [Bacillus cereus strain 21155]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=530692 JM956_RS09750 WP_000648325.1 1889575..1889862(+) (abrB) [Bacillus cereus strain 21155]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526